Miyakogusa Predicted Gene

Lj6g3v1946290.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KRU1_SOYBN 650 79.8 85.0 (tr|I1KRU1) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G34590.1 619 77.4 80.8 | Symbols: | Transketolase family protein | chr2:14568956-14570844 REVERSE LENGTH=406

Medicago Medtr3g076630.1 611 77.2 81.1 | pyruvate dehydrogenase E1 beta subunit | HC | chr3:34442945-34446106 | 20130731

Soybean Glyma08g10200.1 650 79.8 85.0

LJGI gnl|LJGI|TC78639 620 100.0 100.0 homologue to UniRef100_O24458 Cluster: Pyruvate dehydrogenase E1 beta subunit; n=1; Arabidopsis thaliana|Rep: Pyruvate dehydrogenase E1 beta subunit - Arabidopsis thaliana (Mouse-ear cress), partial (25%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1946290.1 length: 399 aa.

IPR005475 Transketolase-like, pyrimidine-binding domain

method AccNumber shortName E-value location

HMMPfam PF02779 Transket_pyr 4.5e-49 83-253

HMMSmart SM00861 Transketolase, 8.2e-56 79-254

IPR005476 Transketolase, C-terminal

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0008152 metabolic process

HMMPfam PF02780 Transketolase_C 7.9e-34 269-386

IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0008152 metabolic process

superfamily SSF52922 TK 1.9e-36 262-399

IPR015941 Transketolase-like, C-terminal

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0008152 metabolic process

Gene3D G3DSA:3.40.50.920 no description 4.2e-36 271-395

no_ID

Gene3D G3DSA:3.40.50.970 no description 1.1e-72 79-270

HMMPanther PTHR11624 DEHYDROGENASE 1.4e-263 35-398

HMMPanther PTHR11624:SF34 SUBFAMILY 1.4e-263 35-398

Seg seg seg NA 78-94
186-198

superfamily SSF52518 Thiamin 3.8e-67 75-278

Wolf-PSORT

Lj6g3v1946290.1 chlo 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1946290.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KRU1_SOYBN	650	79.8	85.0	(tr\|I1KRU1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G34590.1	619	77.4	80.8	\| Symbols: \| Transketolase family protein \| chr2:14568956-14570844 REVERSE LENGTH=406
Medicago	Medtr3g076630.1	611	77.2	81.1	\| pyruvate dehydrogenase E1 beta subunit \| HC \| chr3:34442945-34446106 \| 20130731
Soybean	Glyma08g10200.1	650	79.8	85.0
LJGI	gnl\|LJGI\|TC78639	620	100.0	100.0	homologue to UniRef100_O24458 Cluster: Pyruvate dehydrogenase E1 beta subunit; n=1; Arabidopsis thaliana\|Rep: Pyruvate dehydrogenase E1 beta subunit - Arabidopsis thaliana (Mouse-ear cress), partial (25%)

IPR005475	Transketolase-like, pyrimidine-binding domain
Lj6g3v1946290.1				length: 399 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF02779	Transket_pyr	4.5e-49	83-253
HMMSmart	SM00861	Transketolase,	8.2e-56	79-254
IPR005476	Transketolase, C-terminal
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
HMMPfam	PF02780	Transketolase_C	7.9e-34	269-386
IPR009014	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
superfamily	SSF52922	TK	1.9e-36	262-399
IPR015941	Transketolase-like, C-terminal
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
Gene3D	G3DSA:3.40.50.920	no description	4.2e-36	271-395
no_ID
Gene3D	G3DSA:3.40.50.970	no description	1.1e-72	79-270
HMMPanther	PTHR11624	DEHYDROGENASE	1.4e-263	35-398
HMMPanther	PTHR11624:SF34	SUBFAMILY	1.4e-263	35-398
Seg	seg	seg	NA	78-94 186-198
superfamily	SSF52518	Thiamin	3.8e-67	75-278