Miyakogusa Predicted Gene

Lj6g3v1946230.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MF26_SOYBN 1313 90.8 92.4 (tr|I1MF26) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G46210.1 1160 81.4 86.9 | Symbols: CUL4, ATCUL4 | cullin4 | chr5:18731569-18736653 REVERSE LENGTH=792
Medicago Medtr2g019260.1 1301 88.3 91.5 | ubiquitin-protein ligase, cullin 4 | HC | chr2:6254001-6239383 | 20130731
Soybean Glyma15g10030.1 1313 90.8 92.4  
LJGI gnl|LJGI|TC60680 1441 100.0 100.0 homologue to UniRef100_A7Q145 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1946230.1 length: 768 aa.
IPR001373 Cullin, N-terminal
method AccNumber shortName E-value location
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMPfam PF00888 Cullin 1.7e-191 96-694
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 5.1e-20 625-692
693-768
IPR016158 Cullin homology
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMSmart SM00182 Cullin 1.4e-75 466-615
ProfileScan PS50069 CULLIN_2 59.406 436-665
superfamily SSF75632 Cullin 4.5e-102 429-704
IPR016159 Cullin repeat-like-containing domain
superfamily SSF74788 Cullin 6.7e-101 93-437
IPR019559 Cullin protein, neddylation domain
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMPfam PF10557 Cullin_Nedd8 1.9e-14 722-768
HMMSmart SM00884 Cullin 4.7e-11 721-768
no_ID  
Gene3D G3DSA:1.20.1310.10 no description 1.5e-45 93-215
220-333
335-438
439-546
Gene3D G3DSA:4.10.1030.10 no description 6.5e-29 552-624
HMMPanther PTHR11932 CULLIN 0 59-768
HMMPanther PTHR11932:SF31 CULLIN-2 0 59-768
Seg seg seg NA 8-22
29-49
69-85
383-394
680-693
superfamily SSF46785 "Winged 3.9e-16 703-768
Wolf-PSORT
Lj6g3v1946230.1	nucl 7, chlo 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1946230.1