| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1M1E7_SOYBN | 580 | 73.8 | 80.2 | (tr|I1M1E7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT5G46250.1 | 343 | 54.7 | 72.5 | | Symbols: | RNA-binding protein | chr5:18755388-18758056 FORWARD LENGTH=422 |
| Medicago | Medtr2g019620.1 | 528 | 67.6 | 74.2 | | LA-related protein 6 LA RNA-binding domain protein, putative | HC | chr2:6438990-6443888 | 20130731 |
| Soybean | Glyma13g28880.1 | 580 | 73.8 | 80.2 | |
| LJGI | gnl|LJGI|TC57377 | 2355 | 100.0 | 100.0 | weakly similar to UniRef100_A8MS45 Cluster: Uncharacterized protein At5g46250.3; n=1; Arabidopsis thaliana|Rep: Uncharacterized protein At5g46250.3 - Arabidopsis thaliana (Mouse-ear cress), partial (54%) |
| Lj6g3v1934050.1 | length: 395 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 2.6e-06 | 187-259 |
| HMMSmart | SM00360 | RNA | 0.007 | 186-273 |
| ProfileScan | PS50102 | RRM | 10.258 | 185-272 |
| IPR002344 | Lupus La protein | |||
| Molecular Function | GO:0003723 | RNA binding | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006396 | RNA processing | ||
| Cellular Component | GO:0030529 | ribonucleoprotein complex | ||
| FPrintScan | PR00302 | LUPUSLA | 4.9e-12 | 100-117 126-141 157-170 237-255 |
| IPR006630 | RNA-binding protein Lupus La | |||
| HMMPfam | PF05383 | La | 1.2e-24 | 97-156 |
| HMMSmart | SM00715 | Domain | 2.5e-39 | 91-171 |
| ProfileScan | PS50961 | HTH_LA | 27.587 | 87-178 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | |||
| Gene3D | G3DSA:1.10.10.10 | no description | 3e-29 | 91-174 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 8.7e-10 | 183-260 |
| no_ID | ||||
| HMMPanther | PTHR22792 | LUPUS | 3.5e-73 | 55-360 |
| HMMPanther | PTHR22792:SF26 | LA-RELATED | 3.5e-73 | 55-360 |
| Seg | seg | seg | NA | 56-82 |
| superfamily | SSF46785 | "Winged | 1.8e-28 | 84-175 |
| superfamily | SSF54928 | RNA-binding | 2.6e-11 | 184-308 |
Lj6g3v1934050.1 nucl 11, cysk 3
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj6g3v1934050.1 |