Miyakogusa Predicted Gene

Lj6g3v1931800.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MF45_SOYBN 468 59.5 64.1 (tr|I1MF45) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G06410.1 336 47.4 55.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr3:1947471-1949528 REVERSE LENGTH=462
Medicago Medtr2g019740.1 441 60.2 64.1 | zinc finger C-x8-C-x5-C-x3-H type protein | HC | chr2:6500046-6505955 | 20130731
Soybean Glyma15g10230.1 468 59.5 64.1  
LJGI gnl|LJGI|TC68766 2896 100.0 100.0 similar to UniRef100_A7NW62 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (76%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1931800.1 length: 486 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.1000.10 no description 0.00019 55-76
99-121
HMMPfam PF00642 zf-CCCH 3.5e-08 51-76
97-121
142-166
355-379
HMMSmart SM00356 zinc 1.9e-06 49-76
94-121
140-167
352-379
ProfileScan PS50103 ZF_C3H1 15.281 49-77
94-122
140-168
352-380
no_ID  
HMMPanther PTHR12506 PROTEIN 4.5e-145 7-441
HMMPanther PTHR12506:SF11 ZINC 4.5e-145 7-441
Seg seg seg NA 15-31
176-193
195-210
247-265
286-303
346-357
378-390
440-452
456-467
473-486
superfamily SSF90229 CCCH 2.6e-05 44-83
347-386
89-128
135-174
Wolf-PSORT
Lj6g3v1931800.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1931800.1