Miyakogusa Predicted Gene

Lj6g3v1931420.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MF50_SOYBN 936 86.5 89.5 (tr|I1MF50) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G39090.1 751 69.7 80.6 | Symbols: APC7, AtAPC7 | tetratricopeptide repeat (TPR)-containing protein | chr2:16312771-16317233 REVERSE LENGTH=558
Medicago Medtr2g019850.1 922 85.2 89.7 | anaphase-promoting complex subunit 7 | HC | chr2:6546203-6553642 | 20130731
Soybean Glyma15g10290.1 936 86.5 89.5  
LJGI gnl|LJGI|TC61102 1376 100.0 100.0 similar to UniRef100_A7NW69 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1931420.1 length: 559 aa.
IPR011990 Tetratricopeptide-like helical
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.2e-09 106-183
219-335
336-440
441-521
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 23.173 43-76
228-517
IPR013105 Tetratricopeptide TPR2
HMMPfam PF07719 TPR_2 8.7e-05 487-517
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF13176 TPR_7 0.0097 45-70
HMMPfam PF13181 TPR_8 0.3 351-381
HMMSmart SM00028 Tetratricopeptide 0.031 43-76
140-173
214-247
248-281
349-382
416-450
484-517
ProfileScan PS50005 TPR 10.207 43-76
214-247
248-281
382-415
484-517
no_ID  
HMMPanther PTHR12558 CELL 8.3e-205 1-558
HMMPanther PTHR12558:SF8 ANAPHASE 8.3e-205 1-558
HMMPfam PF13414 TPR_11 3.8e-07 219-279
Seg seg seg NA 83-105
451-460
533-555
superfamily SSF48452 TPR-like 2.9e-07 204-533
44-189
Wolf-PSORT
Lj6g3v1931420.1	chlo 5, nucl 5, cyto 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1931420.1