Miyakogusa Predicted Gene

Lj6g3v1918200.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LE23_MEDTR 669 67.2 75.0 (tr|G7LE23) 30S ribosomal protein S5 OS=Medicago truncatula GN=MTR_8g093680 PE=3 SV=1
TAIR_pep AT1G64880.1 494 55.9 70.1 | Symbols: | Ribosomal protein S5 family protein | chr1:24105713-24108780 FORWARD LENGTH=515
Medicago Medtr8g093680.1 669 67.2 75.0 | 30S ribosomal protein S5 | HC | chr8:39195970-39190835 | 20130731
Soybean Glyma04g08460.2 589 64.1 72.8  
LJGI gnl|LJGI|TC76378 1629 96.9 96.9 similar to UniRef100_A7PJH9 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (59%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1918200.1 length: 500 aa.
IPR000851 Ribosomal protein S5
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPanther PTHR13718 RIBOSOMAL 1.5e-49 339-496
IPR005324 Ribosomal protein S5, C-terminal
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF03719 Ribosomal_S5_C 4.2e-21 419-489
IPR013810 Ribosomal protein S5, N-terminal
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF00333 Ribosomal_S5 1.4e-13 345-407
ProfileScan PS50881 S5_DSRBD 16.168 343-406
IPR014720 Double-stranded RNA-binding-like domain
Gene3D G3DSA:3.30.160.20 no description 2.5e-16 341-404
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Gene3D G3DSA:3.30.230.10 no description 1e-24 408-491
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 4e-22 412-492
no_ID  
Coil coil coiled-coil NA 288-309
313-337
HMMPanther PTHR13718:SF2 30S 1.5e-49 339-496
Seg seg seg NA 105-114
121-137
139-150
263-284
296-306
superfamily SSF54768 dsRNA-binding 1.9e-19 342-410
Wolf-PSORT
Lj6g3v1918200.1	chlo 11, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1918200.1