Miyakogusa Predicted Gene

Lj6g3v1916020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MF93_SOYBN 808 85.4 91.9 (tr|I1MF93) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G03020.2 674 73.8 87.7 | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493
Medicago Medtr2g020720.2 788 84.1 91.2 | transducin/WD-like repeat-protein | HC | chr2:6932664-6942701 | 20130731
Soybean Glyma15g10650.3 808 85.4 91.9  
LJGI gnl|LJGI|FS318494 1398 100.0 100.0 weakly similar to UniRef100_O24467 Cluster: LEC14B homolog; n=1; Prunus armeniaca|Rep: LEC14B homolog - Prunus armeniaca (Apricot), partial (44%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1916020.1 length: 477 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 8.7e-07 204-234
244-277
286-323
380-406
412-447
HMMSmart SM00320 WD40 0.00015 93-132
136-177
195-234
237-277
284-323
361-406
409-448
ProfileScan PS50082 WD_REPEATS_2 9.172 202-243
244-277
291-332
416-457
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.7e-52 110-450
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 23.572 202-457
superfamily SSF50978 WD40 5.6e-56 104-448
no_ID  
HMMPanther PTHR19847 WD40 1.3e-247 11-451
HMMPanther PTHR19847:SF3 WD-REPEAT 1.3e-247 11-451
Seg seg seg NA 456-470
Wolf-PSORT
Lj6g3v1916020.1	nucl 8, chlo 2, mito 1, pero 1, cysk 1, golg_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1916020.1