database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | A1IIA2_LOTJA | 2237 | 98.0 | 98.0 | (tr|A1IIA2) Phytochrome OS=Lotus japonicus GN=phyb PE=2 SV=1 |
TAIR_pep | AT2G18790.1 | 1777 | 76.2 | 86.9 | | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172 |
Medicago | Medtr2g034040.1 | 1997 | 87.3 | 93.8 | | phytochrome protein B | HC | chr2:12993536-12986584 | 20130731 |
Soybean | Glyma09g03990.1 | 2046 | 88.7 | 94.6 | |
LJGI | gnl|LJGI|TC69456 | 6558 | 100.0 | 100.0 | UniRef100_A1IIA2 Cluster: Phytochrome b; n=1; Lotus japonicus|Rep: Phytochrome b - Lotus japonicus, complete |
Lj6g3v1915810.1 | length: 1143 aa. | |||
IPR000014 | PAS domain | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0004871 | signal transducer activity | ||
Biological Process | GO:0007165 | signal transduction | ||
HMMSmart | SM00091 | PAS | 0.0015999997718586555 | 636-703 767-837 |
HMMTigr | TIGR00229 | sensory_box | 8.500000000000006E-11 | 641-756 |
ProfileScan | PS50112 | PAS | 0.0 | 634-705 768-820 |
superfamily | SSF55785 | SSF55785 | 1.699999222840494E-11 | 640-750 751-887 |
IPR001294 | Phytochrome | |||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Biological Process | GO:0009584 | detection of visible light | ||
FPrintScan | PR01033 | PHYTOCHROME | 7.800051553995069E-109 | 154-176 254-273 339-360 449-469 534-553 567-585 637-653 656-671 730-747 750-770 |
IPR001610 | PAC motif | |||
HMMSmart | SM00086 | PAC | 0.12000000217247245 | 850-892 |
IPR003018 | GAF domain | |||
Molecular Function | GO:0005515 | protein binding | ||
HMMPfam | PF01590 | GAF | 4.7000000000000276E-38 | 242-419 |
HMMSmart | SM00065 | GAF | 5.899988094056905E-22 | 239-429 |
IPR003594 | Histidine kinase-like ATPase, ATP-binding domain | |||
Molecular Function | GO:0005524 | ATP binding | ||
Gene3D | G3DSA:3.30.565.10G3DSA:3.30.565.10 | T[975-1137] | 1.7000000000850443E-14 | |
HMMPfam | PF02518 | HATPase_c | 3.2E-11 | 1021-1123 |
HMMSmart | SM00387 | HATPase_c | 8.700012612135134E-17 | 1021-1136 |
superfamily | SSF55874 | ATP_bd_ATPase | 5.799996538547805E-17 | 982-1133 |
IPR003661 | Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain | |||
Molecular Function | GO:0000155 | phosphorelay sensor kinase activity | ||
Biological Process | GO:0007165 | signal transduction | ||
Cellular Component | GO:0016020 | membrane | ||
HMMPfam | PF00512 | HisKA | 2.4E-10 | 913-973 |
HMMSmart | SM00388 | HisKA | 1.0E-14 | 909-973 |
IPR005467 | Signal transduction histidine kinase, core | |||
ProfileScan | PS50109 | HIS_KIN | 0.0 | 916-1136 |
IPR009082 | Signal transduction histidine kinase, homodimeric domain | |||
Molecular Function | GO:0004871 | signal transducer activity | ||
Biological Process | GO:0007165 | signal transduction | ||
superfamily | SSF47384 | His_kin_homodim | 3.6999984480222092E-6 | 888-975 |
IPR012129 | Phytochrome A/B/C/D/E | |||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Biological Process | GO:0009585 | red, far-red light phototransduction | ||
Molecular Function | GO:0009881 | photoreceptor activity | ||
Biological Process | GO:0017006 | protein-tetrapyrrole linkage | ||
Molecular Function | GO:0042803 | protein homodimerization activity | ||
HMMPIR | PIRSF000084 | Phytochrome | 0.0 | 21-1143 |
IPR013515 | Phytochrome, central region | |||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Biological Process | GO:0009584 | detection of visible light | ||
Biological Process | GO:0018298 | protein-chromophore linkage | ||
HMMPfam | PF00360 | PHY | 1.1000000000000125E-70 | 431-607 |
IPR013516 | Phytochrome chromophore binding site | |||
Biological Process | GO:0018298 | protein-chromophore linkage | ||
PatternScan | PS00245 | PHYTOCHROME_1 | 0.0 | 339-348 |
IPR013654 | PAS fold-2 | |||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
HMMPfam | PF08446 | PAS_2 | 9.40000000000003E-44 | 87-206 |
IPR013767 | PAS fold | |||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
HMMPfam | PF00989 | PAS | 9.700000000000003E-22 | 637-752 768-887 |
IPR016132 | Phytochrome chromophore attachment domain | |||
Biological Process | GO:0018298 | protein-chromophore linkage | ||
ProfileScan | PS50046 | PHYTOCHROME_2 | 0.0 | 239-409 |
no_ID | ||||
Gene3D | G3DSA:3.30.450.20G3DSA:3.30.450.20 | T[640-753] | 1.2000000000065628E-7 | 783-887 |
Gene3D | G3DSA:3.30.450.40G3DSA:3.30.450.40 | T[239-319] | 2.4999999999882704E-5 | |
HMMPanther | PTHR24423 | PTHR24423 | 1.1000015067164284E-33 | 636-1123 |
superfamily | SSF55781 | SSF55781 | 4.799997768362738E-9 | 239-431 |
Lj6g3v1915810.1 chlo 5, nucl 3, chlo_mito 3, plas 2, vacu 2
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj6g3v1915810.1 |