Miyakogusa Predicted Gene

Lj6g3v1900330.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IFP9_MEDTR 968 79.7 88.4 (tr|G7IFP9) F-box/LRR-repeat protein OS=Medicago truncatula GN=MTR_2g021030 PE=4 SV=1
TAIR_pep AT4G15475.1 781 63.8 79.3 | Symbols: | F-box/RNI-like superfamily protein | chr4:8845927-8848701 FORWARD LENGTH=610
Medicago Medtr2g021030.1 968 79.7 88.4 | F-box/LRR protein | HC | chr2:7104633-7097070 | 20130731
Soybean Glyma17g02300.1 908 74.8 83.9  
LJGI gnl|LJGI|TC61174 1154 100.0 100.0 weakly similar to UniRef100_Q8LGK0 Cluster: F-box protein family, AtFBL4; n=1; Arabidopsis thaliana|Rep: F-box protein family, AtFBL4 - Arabidopsis thaliana (Mouse-ear cress), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1900330.1 length: 610 aa.
IPR001810 F-box domain, cyclin-like
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00256 A 0.00011 11-52
ProfileScan PS50181 FBOX 9.630 5-52
superfamily SSF81383 F-box 4.7e-07 11-42
IPR006553 Leucine-rich repeat, cysteine-containing subtype
HMMSmart SM00367 Leucine-rich 4.1 139-164
165-189
190-215
217-242
243-267
268-292
293-318
319-344
345-370
371-396
397-422
423-448
449-474
475-499
500-525
526-551
552-577
no_ID  
Gene3D G3DSA:3.80.10.10 no description 1.6e-59 126-317
318-569
HMMPanther PTHR23125 F-BOX/LEUCINE 1e-185 5-582
HMMPanther PTHR23125:SF102SUBFAMILY NOT 1e-185 5-582
HMMPfam PF12937 F-box-like 9.3e-08 11-42
HMMPfam PF13516 LRR_6 0.048 165-187
190-213
319-342
449-472
475-497
Seg seg seg NA 33-48
superfamily SSF52047 RNI-like 4.1e-39 357-590
125-356
Wolf-PSORT
Lj6g3v1900330.1	nucl 5, chlo 3, cyto 3, cysk_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1900330.1 Not targeted -43.740 -7.575 -10.916 61.82% -25.248