Miyakogusa Predicted Gene

Lj6g3v1887770.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1M167_SOYBN 454 91.2 97.5 (tr|I1M167) Elongation factor Tu OS=Glycine max PE=3 SV=2

TAIR_pep AT4G02930.1 428 85.5 94.6 | Symbols: | GTP binding Elongation factor Tu family protein | chr4:1295751-1298354 REVERSE LENGTH=454

Medicago Medtr2g021300.1 435 85.4 91.9 | GTP-binding elongation factor Tu family protein | HC | chr2:7236483-7239439 | 20130731

Soybean Glyma13g28160.1 449 89.8 95.9

LJGI gnl|LJGI|TC59806 287 81.0 81.0 homologue to UniRef100_Q9ZT91 Cluster: Elongation factor Tu, mitochondrial precursor; n=2; Arabidopsis thaliana|Rep: Elongation factor Tu, mitochondrial precursor - Arabidopsis thaliana (Mouse-ear cress), partial (55%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1887770.1 length: 247 aa.

IPR004160 Translation elongation factor EFTu/EF1A, C-terminal

method AccNumber shortName E-value location

Molecular Function GO:0005525 GTP binding

HMMPfam PF03143 GTP_EFTU_D3 1.8e-32 152-245

IPR004161 Translation elongation factor EFTu/EF1A, domain 2

Molecular Function GO:0005525 GTP binding

HMMPfam PF03144 GTP_EFTU_D2 1e-17 76-146

IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel

superfamily SSF50447 Translation 4.2e-34 56-154

IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal

superfamily SSF50465 EF-Tu/eEF-1alpha/eIF2-gamma 1.8e-34 151-247

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 3e-08 2-77

no_ID

Gene3D G3DSA:2.40.30.10 no description 9.7e-42 63-150
154-246

Gene3D G3DSA:3.40.50.300 no description 7.2e-05 2-62

HMMPanther PTHR23115 TRANSLATION 8.3e-139 1-246

HMMPanther PTHR23115:SF44 GTPBP2 8.3e-139 1-246

Wolf-PSORT

Lj6g3v1887770.1 cyto 6.5, chlo 4, cyto_E.R. 4, nucl 1, extr 1, golg 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1887770.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1M167_SOYBN	454	91.2	97.5	(tr\|I1M167) Elongation factor Tu OS=Glycine max PE=3 SV=2
TAIR_pep	AT4G02930.1	428	85.5	94.6	\| Symbols: \| GTP binding Elongation factor Tu family protein \| chr4:1295751-1298354 REVERSE LENGTH=454
Medicago	Medtr2g021300.1	435	85.4	91.9	\| GTP-binding elongation factor Tu family protein \| HC \| chr2:7236483-7239439 \| 20130731
Soybean	Glyma13g28160.1	449	89.8	95.9
LJGI	gnl\|LJGI\|TC59806	287	81.0	81.0	homologue to UniRef100_Q9ZT91 Cluster: Elongation factor Tu, mitochondrial precursor; n=2; Arabidopsis thaliana\|Rep: Elongation factor Tu, mitochondrial precursor - Arabidopsis thaliana (Mouse-ear cress), partial (55%)

IPR004160	Translation elongation factor EFTu/EF1A, C-terminal
Lj6g3v1887770.1				length: 247 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005525	GTP binding
HMMPfam	PF03143	GTP_EFTU_D3	1.8e-32	152-245
IPR004161	Translation elongation factor EFTu/EF1A, domain 2
Molecular Function	GO:0005525	GTP binding
HMMPfam	PF03144	GTP_EFTU_D2	1e-17	76-146
IPR009000	Translation elongation/initiation factor/Ribosomal, beta-barrel
superfamily	SSF50447	Translation	4.2e-34	56-154
IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
superfamily	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma	1.8e-34	151-247
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	3e-08	2-77
no_ID
Gene3D	G3DSA:2.40.30.10	no description	9.7e-42	63-150 154-246
Gene3D	G3DSA:3.40.50.300	no description	7.2e-05	2-62
HMMPanther	PTHR23115	TRANSLATION	8.3e-139	1-246
HMMPanther	PTHR23115:SF44	GTPBP2	8.3e-139	1-246