Miyakogusa Predicted Gene

Lj6g3v1880110.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L845_MEDTR 731 76.9 87.0 (tr|G7L845) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_8g102760 PE=4 SV=1
TAIR_pep AT1G77170.1 540 57.4 75.8 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28998133-28999536 REVERSE LENGTH=467
Medicago Medtr8g102760.1 731 76.9 87.0 | PPR containing plant-like protein | HC | chr8:43261430-43259561 | 20130731
Soybean Glyma08g03870.1 683 76.7 86.0  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1880110.1 length: 453 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.63 71-99
144-163
171-200
346-370
412-437
HMMPfam PF13041 PPR_2 9.5e-08 271-318
HMMTigr TIGR00756 PPR: 0.001 171-203
243-272
274-306
346-369
ProfileScan PS51375 PPR 7.289 67-101
168-202
137-167
271-305
240-270
342-372
306-336
408-442
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00088 405-426
no_ID  
HMMPanther PTHR24015 FAMILY 5.4e-167 68-448
HMMPanther PTHR24015:SF167PENTATRICOPEPTIDE (PPR) 5.4e-167 68-448
Wolf-PSORT
Lj6g3v1880110.1	chlo 8, mito 5.5, cyto_mito 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1880110.1