Miyakogusa Predicted Gene

Lj6g3v1874670.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL A4F2M4_PHAVU 1592 67.8 74.3 (tr|A4F2M4) Starch synthase III OS=Phaseolus vulgaris GN=PvSSIII PE=2 SV=1

TAIR_pep AT1G11720.2 1311 57.6 69.8 | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094

Medicago Medtr2g023320.1 1534 68.0 73.6 | soluble starch synthase III-1 | HC | chr2:8219703-8232653 | 20130731

Soybean Glyma13g27480.1 1563 68.2 74.4

LJGI gnl|LJGI|FS324734 894 94.7 94.7 similar to UniRef100_Q9XGC0 Cluster: Starch synthase isoform SS III; n=1; Vigna unguiculata|Rep: Starch synthase isoform SS III - Vigna unguiculata (Cowpea), partial (6%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1874670.1 length: 1138 aa.

IPR001296 Glycosyl transferase, family 1

method AccNumber shortName E-value location

Biological Process GO:0009058 biosynthetic process

HMMPfam PF00534 Glycos_transf_1 1.7e-07 939-1062

IPR005085 Carbohydrate binding module family 25

Molecular Function GO:2001070 starch binding

HMMPfam PF03423 CBM_25 1.2e-26 253-337
429-518
591-678

HMMSmart SM01066 Carbohydrate 6.5e-23 253-338
428-519
590-679

IPR011835 Glycogen/starch synthase, ADP-glucose type

Molecular Function GO:0009011 starch synthase activity

Biological Process GO:0009250 glucan biosynthetic process

HAMAP MF_00484 Glycogen_synth 33.379 688-1134

IPR013534 Starch synthase, catalytic domain

HMMPfam PF08323 Glyco_transf_5 1.5e-51 689-878

no_ID

Coil coil coiled-coil NA 217-238
351-401

Gene3D G3DSA:3.40.50.2000 no description 7.1e-72 898-1116

HMMPanther PTHR12526 GLYCOSYLTRANSFERASE 2.7e-162 687-1134

HMMPanther PTHR12526:SF17 STARCH 2.7e-162 687-1134

Seg seg seg NA 94-110
209-232
350-387
547-571
892-910

superfamily SSF53756 UDP-Glycosyltransferase/glycogen 1.5e-89 689-1134

Wolf-PSORT

Lj6g3v1874670.1 chlo 11, cyto 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1874670.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A4F2M4_PHAVU	1592	67.8	74.3	(tr\|A4F2M4) Starch synthase III OS=Phaseolus vulgaris GN=PvSSIII PE=2 SV=1
TAIR_pep	AT1G11720.2	1311	57.6	69.8	\| Symbols: SS3 \| starch synthase 3 \| chr1:3951597-3956840 FORWARD LENGTH=1094
Medicago	Medtr2g023320.1	1534	68.0	73.6	\| soluble starch synthase III-1 \| HC \| chr2:8219703-8232653 \| 20130731
Soybean	Glyma13g27480.1	1563	68.2	74.4
LJGI	gnl\|LJGI\|FS324734	894	94.7	94.7	similar to UniRef100_Q9XGC0 Cluster: Starch synthase isoform SS III; n=1; Vigna unguiculata\|Rep: Starch synthase isoform SS III - Vigna unguiculata (Cowpea), partial (6%)

IPR001296	Glycosyl transferase, family 1
Lj6g3v1874670.1				length: 1138 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0009058	biosynthetic process
HMMPfam	PF00534	Glycos_transf_1	1.7e-07	939-1062
IPR005085	Carbohydrate binding module family 25
Molecular Function	GO:2001070	starch binding
HMMPfam	PF03423	CBM_25	1.2e-26	253-337 429-518 591-678
HMMSmart	SM01066	Carbohydrate	6.5e-23	253-338 428-519 590-679
IPR011835	Glycogen/starch synthase, ADP-glucose type
Molecular Function	GO:0009011	starch synthase activity
Biological Process	GO:0009250	glucan biosynthetic process
HAMAP	MF_00484	Glycogen_synth	33.379	688-1134
IPR013534	Starch synthase, catalytic domain
HMMPfam	PF08323	Glyco_transf_5	1.5e-51	689-878
no_ID
Coil	coil	coiled-coil	NA	217-238 351-401
Gene3D	G3DSA:3.40.50.2000	no description	7.1e-72	898-1116
HMMPanther	PTHR12526	GLYCOSYLTRANSFERASE	2.7e-162	687-1134
HMMPanther	PTHR12526:SF17	STARCH	2.7e-162	687-1134
Seg	seg	seg	NA	94-110 209-232 350-387 547-571 892-910
superfamily	SSF53756	UDP-Glycosyltransferase/glycogen	1.5e-89	689-1134