Miyakogusa Predicted Gene
- Lj6g3v1873610.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S677_LOTJA |
247 |
100.0 |
100.0 |
(tr|I3S677) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G62040.2 |
221 |
87.9 |
97.4 |
| Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932782-22934253 FORWARD LENGTH=133 |
| Medicago |
Medtr4g048510.1 |
217 |
86.2 |
96.6 |
| gaba-receptor-associated protein ubiquitin domain protein | HC | chr4:17210565-17207135 | 20130731 |
| Soybean |
Glyma15g11510.1 |
231 |
92.4 |
98.3 |
|
| LJGI |
gnl|LJGI|TC61622 |
720 |
100.0 |
100.0 |
homologue to UniRef100_Q6W5F3 Cluster: Microtubule-associated protein 1 light chain 3; n=1; Gossypium hirsutum|Rep: Microtubule-associated protein 1 light chain 3 - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), partial (98%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1873610.1 |
length: 120 aa. |
| IPR004241 |
Autophagy protein Atg8 ubiquitin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR10969 |
MICROTUBULE-ASSOCIATED |
2.5e-79 |
1-118 |
| HMMPfam |
PF02991 |
Atg8 |
2.9e-51 |
15-118 |
| no_ID |
|
| Gene3D |
G3DSA:3.10.20.90 |
no description |
3.6e-56 |
2-118 |
| HMMPanther |
PTHR10969:SF4 |
MICROTUBULE |
2.5e-79 |
1-118 |
| superfamily |
SSF54236 |
Ubiquitin-like |
2.8e-46 |
3-118 |
- Wolf-PSORT
Lj6g3v1873610.1 cyto 7, nucl 5.5, cysk_nucl 3.5, cyto_pero 3.5, cyto_E.R. 3.5, cyto_plas 3.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1873610.1 |
|