Miyakogusa Predicted Gene
- Lj6g3v1827400.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6SY13_SOYBN |
307 |
80.0 |
85.8 |
(tr|C6SY13) Uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT4G04470.1 |
239 |
60.4 |
75.0 |
| Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:2227963-2229226 REVERSE LENGTH=190 |
| Medicago |
Medtr2g023850.1 |
277 |
78.9 |
87.2 |
| peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | HC | chr2:8451876-8458201 | 20130731 |
| Soybean |
Glyma15g11630.1 |
307 |
80.0 |
85.8 |
|
| LJGI |
gnl|LJGI|TC57612 |
1136 |
100.0 |
100.0 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1827400.1 |
length: 190 aa. |
| IPR007248 |
Mpv17/PMP22 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR11266 |
PEROXISOMAL |
2e-51 |
12-183 |
| HMMPfam |
PF04117 |
Mpv17_PMP22 |
2.7e-20 |
114-177 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
80-92 |
- Wolf-PSORT
Lj6g3v1827400.1 mito 6, chlo 4, cyto 1, plas 1, E.R. 1, pero 1, cyto_pero 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1827400.1 |
|