Miyakogusa Predicted Gene

Lj6g3v1812030.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL O82805_PEA 475 69.7 73.7 (tr|O82805) Knotted1-like class I homeodomain protein OS=Pisum sativum GN=PsKn1 PE=2 SV=1
TAIR_pep AT1G62360.1 366 77.5 84.4 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK homeobox transcription factor | chr1:23058796-23061722 REVERSE LENGTH=382
Medicago Medtr2g024390.1 463 69.0 73.5 | homeobox knotted-like protein | HC | chr2:8797446-8791813 | 20130731
Soybean Glyma15g11850.1 444 84.0 86.1  
LJGI gnl|LJGI|NP7225981 961 98.6 98.6 GB|AY790246.1|AAX21345.1 homeobox knotted-1-like protein KNOX1;homeobox transcription factor; LjKN1
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1812030.1 length: 376 aa.
IPR001356 Homeodomain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00389 Homeodomain 1.2e-12 280-345
ProfileScan PS50071 HOMEOBOX_2 13.086 278-341
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 8.7e-11 258-279
ProfileScan PS51213 ELK 11.174 258-278
IPR005540 KNOX1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 8.8e-22 122-160
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 5.1e-24 173-222
IPR008422 Homeobox KN domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF05920 Homeobox_KN 8.1e-16 298-337
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 3.2e-27 283-344
superfamily SSF46689 Homeodomain-like 1.2e-18 279-356
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 316-339
no_ID  
HMMPanther PTHR11850 HOMEOBOX 1.4e-56 122-349
HMMPanther PTHR11850:SF15 HOMEOBOX 1.4e-56 122-349
Seg seg seg NA 3-14
40-63
70-82
87-95
104-120
Wolf-PSORT
Lj6g3v1812030.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1812030.1 Not targeted -24.696 -14.024 -6.197 20.20% -4.475