Miyakogusa Predicted Gene
- Lj6g3v1791970.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T3U9_MEDTR |
289 |
84.4 |
87.9 |
(tr|I3T3U9) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep |
AT4G04210.1 |
239 |
74.4 |
83.1 |
| Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303 |
| Medicago |
Medtr2g024420.1 |
289 |
84.4 |
87.9 |
| UBA and UBX domain plant protein | HC | chr2:8816758-8821254 | 20130731 |
| Soybean |
Glyma15g11860.1 |
285 |
83.7 |
87.8 |
|
| LJGI |
gnl|LJGI|TC79009 |
975 |
98.6 |
98.6 |
similar to UniRef100_A7PX79 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (91%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1791970.3 |
length: 171 aa. |
| IPR012989 |
SEP domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF08059 |
SEP |
1.9e-21 |
118-170 |
| HMMSmart |
SM00553 |
Domain |
5.6e-18 |
110-171 |
| ProfileScan |
PS51399 |
SEP |
33.324 |
113-171 |
| superfamily |
SSF102848 |
NSFL1 |
1.3e-20 |
105-171 |
| no_ID |
|
| HMMPanther |
PTHR23333 |
UBX |
3.2e-83 |
1-171 |
| HMMPanther |
PTHR23333:SF6 |
PHOSPHATASE-RELATED |
3.2e-83 |
1-171 |
| Seg |
seg |
seg |
NA |
30-38 |
- Wolf-PSORT
Lj6g3v1791970.3 nucl 6.5, cyto_nucl 5.5, cyto 3.5, chlo 2, mito 1, plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1791970.3 |
|