Miyakogusa Predicted Gene

Lj6g3v1707190.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LBA5_SOYBN 230 56.7 73.8 (tr|K7LBA5) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
TAIR_pep AT4G15950.1 145 41.7 56.9 | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II, Rpb4, core protein | chr4:9040743-9041994 FORWARD LENGTH=205
Medicago Medtr2g027530.1 218 59.9 74.4 | RNA polymerase II, Rpb4, core protein | HC | chr2:10081162-10085201 | 20130731
Soybean Glyma09g01880.1 229 56.7 73.8  
LJGI gnl|LJGI|TC57724 1172 99.5 99.5 similar to UniRef100_A2Q5H4 Cluster: RNA polymerase Rpb4; n=1; Medicago truncatula|Rep: RNA polymerase Rpb4 - Medicago truncatula (Barrel medic), partial (48%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1707190.1 length: 200 aa.
IPR005574 RNA polymerase II, Rpb4
method AccNumber shortName E-value location
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF03874 RNA_pol_Rpb4 7.7e-16 86-196
IPR006590 RNA polymerase II, Rpb4, core
HMMSmart SM00657 DNA-directed 1.1e-10 77-200
IPR010997 HRDC-like
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0044237 cellular metabolic process    
superfamily SSF47819 HRDC-like 9.4e-24 43-198
no_ID  
HMMPanther PTHR21297 DNA-DIRECTED 5.5e-14 83-180
Wolf-PSORT
Lj6g3v1707190.1	chlo 5, mito 5, chlo_mito 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1707190.1