Miyakogusa Predicted Gene

Lj6g3v1695020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L073_SOYBN 1056 74.8 84.1 (tr|I1L073) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G02750.1 492 39.1 63.0 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781
Medicago Medtr8g106950.1 470 38.2 60.3 | pentatricopeptide (PPR) repeat protein | HC | chr8:45164389-45168068 | 20130731
Soybean Glyma09g02010.1 1028 80.4 90.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1695020.1 length: 662 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.27 62-84
87-116
149-178
212-241
243-271
273-299
505-525
HMMPfam PF12854 PPR_1 8.5e-08 121-143
178-206
HMMPfam PF13041 PPR_2 3.2e-10 332-379
430-478
HMMTigr TIGR00756 PPR: 1.1e-06 87-118
121-146
149-179
180-208
212-241
243-273
273-298
336-367
433-467
ProfileScan PS51375 PPR 7.388 147-181
85-119
54-84
121-146
240-274
209-239
182-208
333-367
302-332
431-465
400-430
466-496
502-536
569-603
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.7e-12 67-295
no_ID  
HMMPanther PTHR24015 FAMILY 1.4e-199 14-657
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.4e-199 14-657
superfamily SSF48452 TPR-like 0.0047 59-173
226-422
Wolf-PSORT
Lj6g3v1695020.1	cyto 5, nucl 4, chlo 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1695020.1