Miyakogusa Predicted Gene

Lj6g3v1693500.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1L088_SOYBN 1007 86.9 89.4 (tr|I1L088) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G50500.2 841 71.6 80.3 | Symbols: HIT1 | Membrane trafficking VPS53 family protein | chr1:18708217-18715597 REVERSE LENGTH=847

Medicago Medtr2g028270.1 1013 87.4 89.7 | vacuolar sorting-associated-like protein | HC | chr2:10426065-10439315 | 20130731

Soybean Glyma09g02140.1 1007 86.9 89.4

LJGI gnl|LJGI|TC82076 1013 100.0 100.0 homologue to UniRef100_A7PVI9 Cluster: Chromosome chr9 scaffold_33, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_33, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1693500.1 length: 565 aa.

IPR007234 Vps53-like, N-terminal

method AccNumber shortName E-value location

HMMPfam PF04100 Vps53_N 7.3e-44 2-166

no_ID

Coil coil coiled-coil NA 23-44

HMMPanther PTHR12820 VACUOLAR 2.4e-159 2-491

HMMPanther PTHR12820:SF0 SUBFAMILY 2.4e-159 2-491

Seg seg seg NA 86-94
496-521
526-540

Wolf-PSORT

Lj6g3v1693500.1 chlo 6, cyto 4, chlo_mito 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1693500.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1L088_SOYBN	1007	86.9	89.4	(tr\|I1L088) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G50500.2	841	71.6	80.3	\| Symbols: HIT1 \| Membrane trafficking VPS53 family protein \| chr1:18708217-18715597 REVERSE LENGTH=847
Medicago	Medtr2g028270.1	1013	87.4	89.7	\| vacuolar sorting-associated-like protein \| HC \| chr2:10426065-10439315 \| 20130731
Soybean	Glyma09g02140.1	1007	86.9	89.4
LJGI	gnl\|LJGI\|TC82076	1013	100.0	100.0	homologue to UniRef100_A7PVI9 Cluster: Chromosome chr9 scaffold_33, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr9 scaffold_33, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)

IPR007234	Vps53-like, N-terminal
Lj6g3v1693500.1				length: 565 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF04100	Vps53_N	7.3e-44	2-166
no_ID
Coil	coil	coiled-coil	NA	23-44
HMMPanther	PTHR12820	VACUOLAR	2.4e-159	2-491
HMMPanther	PTHR12820:SF0	SUBFAMILY	2.4e-159	2-491
Seg	seg	seg	NA	86-94 496-521 526-540