Miyakogusa Predicted Gene

Lj6g3v1675410.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MG20_SOYBN 865 75.5 76.9 (tr|I1MG20) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G30460.1 512 53.4 60.0 | Symbols: CPSF30, ATCPSF30 | cleavage and polyadenylation specificity factor 30 | chr1:10771469-10775323 REVERSE LENGTH=631
Medicago Medtr2g029540.1 843 71.7 74.3 | cleavage and polyadenylation specificity factor CPSF30 | HC | chr2:11072135-11082678 | 20130731
Soybean Glyma15g13480.1 865 75.5 76.9  
LJGI gnl|LJGI|BP037936 410 100.0 100.0 homologue to UniRef100_A7Q1D4 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1675410.1 length: 606 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00356 zinc 0.024 14-40
42-66
ProfileScan PS50103 ZF_C3H1 7.930 1-13
40-67
14-38
IPR007275 YTH domain
HMMPfam PF04146 YTH 8.6e-48 175-310
ProfileScan PS50882 YTH 58.718 175-310
no_ID  
Coil coil coiled-coil NA 133-154
HMMPanther PTHR12357 YTH 5.2e-95 130-567
HMMPanther PTHR12357:SF3 SPLICING 5.2e-95 130-567
Seg seg seg NA 135-153
239-247
320-335
352-368
379-385
431-447
465-477
504-515
superfamily SSF90229 CCCH 5e-05 35-73
Wolf-PSORT
Lj6g3v1675410.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1675410.1