Miyakogusa Predicted Gene

Lj6g3v1655350.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L0E0_SOYBN 739 74.7 83.0 (tr|I1L0E0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G05410.1 526 55.4 69.4 | Symbols: YAO | Transducin/WD40 repeat-like superfamily protein | chr4:2743229-2745521 REVERSE LENGTH=504
Medicago Medtr2g029940.1 727 71.7 82.0 | U3 small nucleolar RNA-associated-like protein | HC | chr2:11202079-11206552 | 20130731
Soybean Glyma09g02690.1 739 74.7 83.0  
LJGI gnl|LJGI|FS323024 525 99.3 99.3 similar to UniRef100_A8J585 Cluster: Predicted protein; n=1; Chlamydomonas reinhardtii|Rep: Predicted protein - Chlamydomonas reinhardtii, partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1655350.1 length: 500 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.036 141-174
208-235
240-277
285-317
325-357
HMMSmart SM00320 WD40 0.49 135-174
196-235
238-277
280-318
320-358
403-438
ProfileScan PS50082 WD_REPEATS_2 14.519 142-183
203-244
245-286
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.9e-49 141-474
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 32.588 142-367
superfamily SSF50978 WD40 4.6e-50 93-484
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 222-236
264-278
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 5e-06 222-236
264-278
345-359
no_ID  
HMMPanther PTHR19865 U3 8e-164 4-500
Seg seg seg NA 36-53
56-62
92-103
Wolf-PSORT
Lj6g3v1655350.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1655350.1