Miyakogusa Predicted Gene

Lj6g3v1618130.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MB64_SOYBN 384 78.0 88.0 (tr|K7MB64) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G49950.1 293 62.1 75.7 | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300
Medicago Medtr2g031870.2 352 71.2 85.4 | myb transcription factor | HC | chr2:12078577-12083728 | 20130731
Soybean Glyma15g14320.1 382 78.0 88.0  
LJGI gnl|LJGI|TC59841 1453 100.0 100.0 similar to UniRef100_Q0PJL7 Cluster: MYB transcription factor MYB55; n=1; Glycine max|Rep: MYB transcription factor MYB55 - Glycine max (Soybean), partial (81%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1618130.1 length: 300 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 8.5e-09 5-56
HMMSmart SM00717 SANT 5e-07 4-59
IPR005818 Histone H1/H5
Cellular Component GO:0000786 nucleosome    
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006334 nucleosome assembly    
HMMPfam PF00538 Linker_histone 2.3e-10 125-180
HMMSmart SM00526 Domain 3.8e-12 117-182
ProfileScan PS51504 H15 23.622 119-187
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 5.3e-12 5-56
superfamily SSF46689 Homeodomain-like 3.1e-08 5-57
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 7.8e-14 118-188
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 10.796 1-58
no_ID  
Coil coil coiled-coil NA 243-288
HMMPanther PTHR21717 TELOMERIC 2.4e-77 1-297
HMMPanther PTHR21717:SF9 TELOMERIC 2.4e-77 1-297
Seg seg seg NA 241-284
superfamily SSF46785 "Winged 2.6e-18 115-200
Wolf-PSORT
Lj6g3v1618130.1	nucl 11, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1618130.1