Miyakogusa Predicted Gene

Lj6g3v1601950.3

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7K852_MEDTR 412 69.8 78.8 (tr|G7K852) Transmembrane protein 45B OS=Medicago truncatula GN=MTR_5g027180 PE=4 SV=1

TAIR_pep AT1G32120.1 356 63.3 74.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206

Medicago Medtr5g027180.1 412 69.8 78.8 | transmembrane 45B-like protein | HC | chr5:11271754-11267763 | 20130731

Soybean Glyma01g35110.1 412 71.9 80.2

LJGI gnl|LJGI|TC60288 1628 99.5 99.5 similar to UniRef100_A7QHC3 Cluster: Chromosome chr2 scaffold_97, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_97, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1601950.3 length: 278 aa.

IPR006904 Protein of unknown function DUF716, TMEM45

method AccNumber shortName E-value location

HMMPanther PTHR16007 EPIDIDYMAL 1.2e-110 1-278

HMMPfam PF04819 DUF716 3.1e-41 120-254

no_ID

HMMPanther PTHR16007:SF5 SUBFAMILY 1.2e-110 1-278

Seg seg seg NA 124-142
232-247

Wolf-PSORT

Lj6g3v1601950.3 chlo 9, extr 3, plas 1, E.R. 1, E.R._plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1601950.3

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7K852_MEDTR	412	69.8	78.8	(tr\|G7K852) Transmembrane protein 45B OS=Medicago truncatula GN=MTR_5g027180 PE=4 SV=1
TAIR_pep	AT1G32120.1	356	63.3	74.2	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). \| chr1:11552926-11558608 FORWARD LENGTH=1206
Medicago	Medtr5g027180.1	412	69.8	78.8	\| transmembrane 45B-like protein \| HC \| chr5:11271754-11267763 \| 20130731
Soybean	Glyma01g35110.1	412	71.9	80.2
LJGI	gnl\|LJGI\|TC60288	1628	99.5	99.5	similar to UniRef100_A7QHC3 Cluster: Chromosome chr2 scaffold_97, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr2 scaffold_97, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%)

IPR006904	Protein of unknown function DUF716, TMEM45
Lj6g3v1601950.3				length: 278 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR16007	EPIDIDYMAL	1.2e-110	1-278
HMMPfam	PF04819	DUF716	3.1e-41	120-254
no_ID
HMMPanther	PTHR16007:SF5	SUBFAMILY	1.2e-110	1-278
Seg	seg	seg	NA	124-142 232-247