Miyakogusa Predicted Gene

Lj6g3v1588730.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q9MAX8_SOYBN 501 91.5 96.9 (tr|Q9MAX8) Epsilon1-COP OS=Glycine max GN=cope1 PE=2 SV=1
TAIR_pep AT1G30630.1 430 76.6 91.4 | Symbols: | Coatomer epsilon subunit | chr1:10858546-10860173 REVERSE LENGTH=292
Medicago Medtr2g032130.1 493 90.3 97.3 | coatomer epsilon subunit | HC | chr2:12225625-12221311 | 20130731
Soybean Glyma15g14450.1 502 91.5 96.9  
LJGI gnl|LJGI|TC67284 1011 100.0 100.0 similar to UniRef100_Q9MAX8 Cluster: Epsilon1-COP; n=1; Glycine max|Rep: Epsilon1-COP - Glycine max (Soybean), partial (59%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1588730.2 length: 259 aa.
IPR006822 Coatomer, epsilon subunit
method AccNumber shortName E-value location
Molecular Function GO:0005198 structural molecule activity    
Biological Process GO:0006890 retrograde vesicle-mediated transport, Golgi to ER    
Cellular Component GO:0030126 COPI vesicle coat    
HMMPIR PIRSF016478 Oatomer, 4.5e-85 1-258
HMMPanther PTHR10805 COATOMER 2.3e-118 1-259
HMMPfam PF04733 Coatomer_E 1e-124 3-255
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.9e-11 101-253
no_ID  
HMMPanther PTHR10805:SF0 COATOMER 2.3e-118 1-259
superfamily SSF48452 TPR-like 4.3e-11 102-252
Wolf-PSORT
Lj6g3v1588730.2	nucl 4, extr 4, chlo 3, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1588730.2