Miyakogusa Predicted Gene

Lj6g3v1586670.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IKZ2_MEDTR 1255 84.7 89.7 (tr|G7IKZ2) DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_2g032630 PE=3 SV=1
TAIR_pep AT3G06480.1 757 59.0 69.4 | Symbols: | DEAD box RNA helicase family protein | chr3:1985697-1989666 REVERSE LENGTH=1088
Medicago Medtr2g032630.1 1262 85.5 90.5 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr2:12277517-12285182 | 20130731
Soybean Glyma09g03560.1 1182 81.8 87.5  
LJGI gnl|LJGI|AV407128 444 100.0 100.0 similar to UniRef100_Q0IR12 Cluster: Os11g0689400 protein; n=1; Oryza sativa Japonica Group|Rep: Os11g0689400 protein - Oryza sativa subsp. japonica (Rice), partial (3%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1586670.1 length: 1091 aa.
IPR001202 WW domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00397 WW 1.5e-06 22-52
HMMSmart SM00456 Domain 6.2e-07 21-54
PatternScan PS01159 WW_DOMAIN_1 NA 26-52
ProfileScan PS50020 WW_DOMAIN_2 11.448 20-54
superfamily SSF51045 WW 1.8e-08 12-53
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.9e-26 770-840
HMMSmart SM00490 helicase 9.9e-33 760-840
ProfileScan PS51194 HELICASE_CTER 24.083 735-879
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.8e-44 525-695
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5e-60 520-723
ProfileScan PS51192 HELICASE_ATP_BIND_1 30.434 532-706
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 11.441 501-529
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.6e-73 572-863
no_ID  
Gene3D G3DSA:2.20.70.10 no description 0.00088 18-52
Gene3D G3DSA:3.40.50.300 no description 8.5e-55 485-721
722-877
HMMPanther PTHR24031 FAMILY 1.7e-264 471-1030
HMMPanther PTHR24031:SF1 SUBFAMILY 1.7e-264 471-1030
Seg seg seg NA 78-113
118-139
154-181
834-843
899-961
964-993
997-1009
1040-1060
Wolf-PSORT
Lj6g3v1586670.1	cyto 6, nucl 3, cyto_pero 3, chlo 1, mito 1, plas 1, vacu 1, E.R. 1, chlo_mito 1, E.R._vacu 1, E.R._plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1586670.1