Miyakogusa Predicted Gene
- Lj6g3v1525980.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IMW4_MEDTR |
484 |
83.4 |
91.1 |
(tr|G7IMW4) FAR1-related protein OS=Medicago truncatula GN=MTR_2g034860 PE=4 SV=1 |
| TAIR_pep |
AT1G10240.1 |
224 |
56.8 |
76.2 |
| Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680 |
| Medicago |
Medtr8g447350.1 |
50.8 |
34.2 |
45.9 |
| hypothetical protein | HC | chr8:18615160-18613818 | 20130731 |
| Soybean |
Glyma15g15450.1 |
466 |
81.2 |
87.5 |
|
| LJGI |
gnl|LJGI|TC69831 |
1013 |
100.0 |
100.0 |
weakly similar to UniRef100_A7Q0J4 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1525980.1 |
length: 268 aa. |
| IPR006564 |
Zinc finger, PMZ-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMSmart |
SM00575 |
plant |
5.7e-07 |
75-102 |
| IPR007527 |
Zinc finger, SWIM-type |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF04434 |
SWIM |
3e-07 |
72-97 |
| ProfileScan |
PS50966 |
ZF_SWIM |
9.804 |
67-100 |
| no_ID |
|
| HMMPanther |
PTHR31669 |
FAMILY |
5.5e-16 |
10-268 |
| HMMPanther |
PTHR31669:SF0 |
SUBFAMILY |
5.5e-16 |
10-268 |
- Wolf-PSORT
Lj6g3v1525980.1 nucl 10, mito 2, cyto 1, plas 1, chlo_mito 1, cyto_mito 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1525980.1 |
|