Miyakogusa Predicted Gene

Lj6g3v1513530.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5XQP4_PRUPE 960 76.3 87.0 (tr|M5XQP4) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000503mg PE=4 SV=1
TAIR_pep AT3G16830.1 922 73.8 84.7 | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131
Medicago Medtr4g120900.1 974 78.5 86.5 | topless-like protein | HC | chr4:49954198-49962193 | 20130731
Soybean Glyma10g29090.1 914 74.3 84.4  
LJGI gnl|LJGI|BP041884 944 100.0 100.0 weakly similar to UniRef100_A7PRX2 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1513530.2 length: 591 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.003 340-375
449-483
487-525
HMMSmart SM00320 WD40 98 336-375
397-436
442-483
485-526
529-572
ProfileScan PS50082 WD_REPEATS_2 9.272 449-492
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 0.00021 4-36
ProfileScan PS50896 LISH 9.958 4-36
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 8.7e-13 34-92
ProfileScan PS50897 CTLH 13.001 34-92
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.4e-29 336-585
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.787 342-492
superfamily SSF50978 WD40 6.9e-32 290-586
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 470-484
no_ID  
HMMPanther PTHR22847 WD40 1.6e-144 95-588
HMMPanther PTHR22847:SF106SUBFAMILY NOT 1.6e-144 95-588
Seg seg seg NA 241-246
261-275
Wolf-PSORT
Lj6g3v1513530.2	nucl 7, cyto 4, chlo 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1513530.2