| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | G7JMQ4_MEDTR | 880 | 73.9 | 81.5 | (tr|G7JMQ4) WD repeat-containing protein OS=Medicago truncatula GN=MTR_4g120900 PE=4 SV=1 |
| TAIR_pep | AT3G16830.1 | 812 | 67.8 | 78.4 | | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131 |
| Medicago | Medtr4g120900.1 | 882 | 73.9 | 81.5 | | topless-like protein | HC | chr4:49954198-49962193 | 20130731 |
| Soybean | Glyma03g39290.1 | 818 | 67.9 | 78.7 | |
| LJGI | gnl|LJGI|TC63187 | 1007 | 100.0 | 100.0 | similar to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like - Medicago truncatula (Barrel medic), partial (12%) |
| Lj6g3v1513530.1 | length: 548 aa. | |||
| IPR001680 | WD40 repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0005515 | protein binding | ||
| HMMPfam | PF00400 | WD40 | 0.00037 | 330-367 |
| HMMSmart | SM00320 | WD40 | 1e+02 | 30-70 246-282 285-325 328-367 417-459 471-513 |
| ProfileScan | PS50082 | WD_REPEATS_2 | 12.213 | 48-79 335-376 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:2.130.10.10 | no description | 2.2e-34 | 3-125 187-515 |
| IPR017986 | WD40-repeat-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| ProfileScan | PS50294 | WD_REPEATS_REGION | 12.288 | 38-79 251-376 |
| superfamily | SSF50978 | WD40 | 1.9e-34 | 208-513 |
| no_ID | ||||
| HMMPanther | PTHR22847 | WD40 | 1.5e-195 | 1-537 |
| HMMPanther | PTHR22847:SF106SUBFAMILY | NOT | 1.5e-195 | 1-537 |
| Seg | seg | seg | NA | 200-209 |
| superfamily | SSF75011 | 3-carboxy-cis,cis-mucoante | 5.4e-15 | 4-323 |
Lj6g3v1513530.1 nucl 9, cyto 2, mito 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj6g3v1513530.1 |