Miyakogusa Predicted Gene

Lj6g3v1464020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MBF2_SOYBN 1177 83.4 90.8 (tr|K7MBF2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G06880.2 760 55.1 72.7 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:2170516-2175686 REVERSE LENGTH=1264
Medicago Medtr2g436530.1 1131 81.3 89.0 | E3 ubiquitin-protein ligase LIN-like protein, putative | HC | chr2:14213566-14206242 | 20130731
Soybean Glyma15g15950.1 1014 74.4 82.5  
LJGI gnl|LJGI|TC74375 1808 99.7 99.7 weakly similar to UniRef100_A7Q8C8 Cluster: Chromosome chr5 scaffold_64, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_64, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1464020.1 length: 663 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 4.6e-07 379-409
419-453
HMMSmart SM00320 WD40 62 369-409
414-453
495-531
583-622
ProfileScan PS50082 WD_REPEATS_2 12.514 377-418
421-454
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 8.5e-25 374-660
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 2.8e-10 28-369
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 17.086 377-462
superfamily SSF50978 WD40 4.5e-26 373-621
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 396-410
no_ID  
HMMPanther PTHR22844 F-BOX 1.1e-21 385-660
Seg seg seg NA 279-298
Wolf-PSORT
Lj6g3v1464020.1	nucl 8, cyto 3, vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1464020.1