Miyakogusa Predicted Gene

Lj6g3v1444540.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SHJ2_LOTJA 211 100.0 100.0 (tr|I3SHJ2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT4G15790.1 145 75.3 88.2 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr4:8982390-8984069 FORWARD LENGTH=147

Medicago Medtr2g436860.1 190 89.6 95.3 | hypothetical protein | HC | chr2:14401447-14397221 | 20130731

Soybean Glyma09g05060.1 184 89.6 92.5

LJGI gnl|LJGI|TC59120 720 100.0 100.0 similar to UniRef100_A7NW42 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (70%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1444540.1 length: 121 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 26-47
51-97

Seg seg seg NA 2-14

Wolf-PSORT

Lj6g3v1444540.1 nucl 6.5, nucl_plas 4.5, plas 1.5, chlo 1, cyto 1, mito 1, extr 1, vacu 1, cysk 1, chlo_mito 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1444540.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SHJ2_LOTJA	211	100.0	100.0	(tr\|I3SHJ2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT4G15790.1	145	75.3	88.2	\| Symbols: \| unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). \| chr4:8982390-8984069 FORWARD LENGTH=147
Medicago	Medtr2g436860.1	190	89.6	95.3	\| hypothetical protein \| HC \| chr2:14401447-14397221 \| 20130731
Soybean	Glyma09g05060.1	184	89.6	92.5
LJGI	gnl\|LJGI\|TC59120	720	100.0	100.0	similar to UniRef100_A7NW42 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (70%)

no_ID
Lj6g3v1444540.1				length: 121 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	26-47 51-97
Seg	seg	seg	NA	2-14