Miyakogusa Predicted Gene

Lj6g3v1382270.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL F6H539_VITVI 1103 80.7 84.3 (tr|F6H539) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01600 PE=2 SV=1
TAIR_pep AT2G30950.1 1018 76.5 82.5 | Symbols: VAR2, FTSH2 | FtsH extracellular protease family | chr2:13174692-13177064 FORWARD LENGTH=695
Medicago Medtr2g438140.1 1084 80.2 83.9 | ATP-dependent zinc metalloprotease FTSH protein | HC | chr2:15376886-15381581 | 20130731
Soybean Glyma15g17070.2 1100 81.0 84.5  
LJGI gnl|LJGI|TC67783 1352 88.1 88.1 homologue to UniRef100_A7PJL7 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (69%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1382270.1 length: 691 aa.
IPR000642 Peptidase M41
method AccNumber shortName E-value location
Molecular Function GO:0004222 metalloendopeptidase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006508 proteolysis    
HMMPfam PF01434 Peptidase_M41 1.9e-77 459-668
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 3.3e-24 261-400
IPR003959 ATPase, AAA-type, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 3.9e-45 265-396
IPR003960 ATPase, AAA-type, conserved site
Molecular Function GO:0005524 ATP binding    
PatternScan PS00674 AAA NA 368-386
IPR005936 Peptidase, FtsH
Molecular Function GO:0004222 metalloendopeptidase activity    
Cellular Component GO:0016020 membrane    
Biological Process GO:0030163 protein catabolic process    
HAMAP MF_01458 FtsH 35.454 31-680
HMMTigr TIGR01241 FtsH_fam: 1.5e-213 174-669
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-74 218-470
no_ID  
Gene3D G3DSA:1.10.8.60 no description 6.5e-23 407-473
Gene3D G3DSA:3.40.50.300 no description 9.6e-63 226-406
HMMPanther PTHR23076 METALLOPROTEASE 0 55-682
HMMPanther PTHR23076:SF24 EMB2458 0 55-682
Seg seg seg NA 30-42
178-212
334-344
436-449
superfamily SSF140990 FtsH 2.9e-63 478-681
Wolf-PSORT
Lj6g3v1382270.1	chlo 12, nucl 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1382270.1