Miyakogusa Predicted Gene

Lj6g3v1356520.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L1B8_SOYBN 1564 77.8 82.9 (tr|I1L1B8) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G25880.1 704 45.6 57.6 | Symbols: APUM6, PUM6 | pumilio 6 | chr4:13155518-13159078 FORWARD LENGTH=861
Medicago Medtr2g036900.2 1515 75.9 82.5 | pumilio-family RNA-binding repeatprotein | HC | chr2:16007791-15999134 | 20130731
Soybean Glyma15g17680.1 1441 73.7 79.3  
LJGI gnl|LJGI|TC80709 888 100.0 100.0 weakly similar to UniRef100_A7Q4A4 Cluster: Chromosome chr9 scaffold_49, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_49, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1356520.1 length: 976 aa.
IPR001313 Pumilio RNA-binding repeat
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00806 PUF 7.4e-08 649-678
686-716
723-750
764-790
797-827
830-863
865-898
910-937
HMMSmart SM00025 Pumilio-like 1.7e-08 648-683
684-719
720-755
756-791
792-828
829-864
865-900
907-942
ProfileScan PS50302 PUM 10.740 648-683
684-719
720-755
756-791
792-828
829-864
865-900
901-942
ProfileScan PS50303 PUM_HD 130.438 628-968
IPR011989 Armadillo-like helical
Gene3D G3DSA:1.25.10.10 no description 3.3e-134 630-972
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 2e-115 628-966
no_ID  
HMMPanther PTHR12537 RNA 2.5e-244 1-974
HMMPanther PTHR12537:SF12 PUMILIO 2.5e-244 1-974
Seg seg seg NA 78-91
116-127
230-250
274-283
Wolf-PSORT
Lj6g3v1356520.1	nucl 11, chlo 1, cyto 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1356520.1