Miyakogusa Predicted Gene

Lj6g3v1333010.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MBU2_SOYBN 879 64.7 72.9 (tr|K7MBU2) Uncharacterized protein (Fragment) OS=Glycine max PE=3 SV=1
TAIR_pep AT4G29940.1 307 72.3 87.6 | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=796
Medicago Medtr2g038000.1 795 60.2 70.5 | pathogenesis-related homeodomain-like protein, putative | HC | chr2:16499640-16505838 | 20130731
Soybean Glyma09g06730.1 818 69.6 75.0  
LJGI gnl|LJGI|AV779956 694 98.6 98.6 similar to UniRef100_A7QXM2 Cluster: Chromosome undetermined scaffold_226, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_226, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1333010.2 length: 721 aa.
IPR001356 Homeodomain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00046 Homeobox 1.6e-07 503-547
HMMSmart SM00389 Homeodomain 0.00016 494-556
ProfileScan PS50071 HOMEOBOX_2 10.884 492-552
IPR001965 Zinc finger, PHD-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 1.9e-09 239-292
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 4.5e-09 483-546
superfamily SSF46689 Homeodomain-like 7.5e-10 481-551
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 5.2e-13 222-297
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.3e-11 236-295
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 240-291
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
HMMPfam PF00628 PHD 1.2e-10 239-294
ProfileScan PS50016 ZF_PHD_2 10.540 237-294
no_ID  
Coil coil coiled-coil NA 666-694
HMMPanther PTHR12628 POLYCOMB-LIKE 7.4e-88 97-339
HMMPanther PTHR12628:SF10 HYPOTHETICAL 7.4e-88 97-339
Seg seg seg NA 42-62
132-157
335-356
366-384
471-482
Wolf-PSORT
Lj6g3v1333010.2	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1333010.2