Miyakogusa Predicted Gene

Lj6g3v1330870.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IG89_MEDTR 496 91.1 96.1 (tr|G7IG89) DNA ligase OS=Medicago truncatula GN=MTR_2g038030 PE=3 SV=1
TAIR_pep AT5G57160.1 466 82.9 93.2 | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219
Medicago Medtr2g038030.1 498 90.8 96.2 | DNA ligase | HC | chr2:16517930-16532770 | 20130731
Soybean Glyma09g06760.1 307 77.9 80.8  
LJGI gnl|LJGI|TC73693 240 98.4 98.4 similar to UniRef100_A7QUD6 Cluster: Chromosome chr11 scaffold_177, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_177, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1330870.1 length: 270 aa.
IPR012308 DNA ligase, ATP-dependent, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003910 DNA ligase (ATP) activity    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0006310 DNA recombination    
Gene3D G3DSA:1.10.3260.10 no description 0.0005 26-105
HMMPfam PF04675 DNA_ligase_A_N 2.1e-22 23-110
IPR012310 DNA ligase, ATP-dependent, central
Molecular Function GO:0003910 DNA ligase (ATP) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0006310 DNA recombination    
HMMPfam PF01068 DNA_ligase_A_M 2.9e-20 149-250
IPR016059 DNA ligase, ATP-dependent, conserved site
Molecular Function GO:0003909 DNA ligase activity    
Biological Process GO:0051103 DNA ligation involved in DNA repair    
PatternScan PS00697 DNA_LIGASE_A1 NA 173-181
no_ID  
Coil coil coiled-coil NA 49-70
Gene3D G3DSA:3.30.470.30 no description 9.7e-14 178-261
HMMPanther PTHR10459 DNA 9.4e-92 1-260
HMMPanther PTHR10459:SF7 DNA 9.4e-92 1-260
superfamily SSF56091 DNA 2e-23 105-230
Wolf-PSORT
Lj6g3v1330870.1	cyto 9, nucl 3, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1330870.1