Miyakogusa Predicted Gene

Lj6g3v1270770.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S8Q9_LOTJA 242 72.0 72.5 (tr|I3S8Q9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT4G26150.1 75.1 36.9 51.5 | Symbols: CGA1, GATA22, GNL | cytokinin-responsive gata factor 1 | chr4:13253210-13254659 FORWARD LENGTH=352

Medicago Medtr2g038720.1 155 39.8 46.5 | GATA type zinc finger transcription factor family protein | HC | chr2:16955533-16953838 | 20130731

Soybean Glyma15g18380.1 207 46.2 56.3

LJGI gnl|LJGI|TC59253 1863 99.9 99.9 similar to UniRef100_Q5HZ36 Cluster: GATA transcription factor 24; n=2; Arabidopsis thaliana|Rep: GATA transcription factor 24 - Arabidopsis thaliana (Mouse-ear cress), partial (17%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1270770.1 length: 315 aa.

IPR000679 Zinc finger, GATA-type

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0008270 zinc ion binding

Molecular Function GO:0043565 sequence-specific DNA binding

HMMPfam PF00320 GATA 4.8e-16 191-224

HMMSmart SM00401 zinc 2e-17 185-236

PatternScan PS00344 GATA_ZN_FINGER_1 NA 191-216

ProfileScan PS50114 GATA_ZN_FINGER_2 12.360 189-221

IPR013088 Zinc finger, NHR/GATA-type

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0008270 zinc ion binding

Gene3D G3DSA:3.30.50.10 no description 2.7e-14 189-224

no_ID

HMMPanther PTHR10071 TRANSCRIPTION 2.3e-16 189-225

Seg seg seg NA 172-186
219-244
259-270

superfamily SSF57716 Glucocorticoid 5.2e-14 185-251

Wolf-PSORT

Lj6g3v1270770.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1270770.1 Not targeted -53.410 -33.599 -4.730 80.17% -15.080

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S8Q9_LOTJA	242	72.0	72.5	(tr\|I3S8Q9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT4G26150.1	75.1	36.9	51.5	\| Symbols: CGA1, GATA22, GNL \| cytokinin-responsive gata factor 1 \| chr4:13253210-13254659 FORWARD LENGTH=352
Medicago	Medtr2g038720.1	155	39.8	46.5	\| GATA type zinc finger transcription factor family protein \| HC \| chr2:16955533-16953838 \| 20130731
Soybean	Glyma15g18380.1	207	46.2	56.3
LJGI	gnl\|LJGI\|TC59253	1863	99.9	99.9	similar to UniRef100_Q5HZ36 Cluster: GATA transcription factor 24; n=2; Arabidopsis thaliana\|Rep: GATA transcription factor 24 - Arabidopsis thaliana (Mouse-ear cress), partial (17%)

IPR000679	Zinc finger, GATA-type
Lj6g3v1270770.1				length: 315 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0008270	zinc ion binding
Molecular Function	GO:0043565	sequence-specific DNA binding
HMMPfam	PF00320	GATA	4.8e-16	191-224
HMMSmart	SM00401	zinc	2e-17	185-236
PatternScan	PS00344	GATA_ZN_FINGER_1	NA	191-216
ProfileScan	PS50114	GATA_ZN_FINGER_2	12.360	189-221
IPR013088	Zinc finger, NHR/GATA-type
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0008270	zinc ion binding
Gene3D	G3DSA:3.30.50.10	no description	2.7e-14	189-224
no_ID
HMMPanther	PTHR10071	TRANSCRIPTION	2.3e-16	189-225
Seg	seg	seg	NA	172-186 219-244 259-270
superfamily	SSF57716	Glucocorticoid	5.2e-14	185-251