Miyakogusa Predicted Gene

Lj6g3v1259720.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MH75_SOYBN 684 86.4 88.9 (tr|I1MH75) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G19520.1 627 88.1 94.7 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507
Medicago Medtr2g039250.1 655 83.5 87.0 | nucleosome/chromatin assembly factor group protein | HC | chr2:17196765-17189459 | 20130731
Soybean Glyma15g18450.1 684 86.4 88.9  
LJGI gnl|LJGI|TC59310 1398 99.9 99.9 homologue to UniRef100_Q52ZH8 Cluster: FVE; n=1; Pisum sativum|Rep: FVE - Pisum sativum (Garden pea), partial (45%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1259720.1 length: 402 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0011 223-245
281-316
325-361
373-393
HMMSmart SM00320 WD40 9.1e-06 151-190
205-245
276-316
320-361
ProfileScan PS50082 WD_REPEATS_2 10.275 222-254
283-316
328-361
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7.5e-39 140-395
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 15.795 283-392
superfamily SSF50978 WD40 9.7e-36 150-395
IPR022052 Histone-binding protein RBBP4
HMMPfam PF12265 CAF1C_H4-bd 6.5e-21 62-131
no_ID  
HMMPanther PTHR22850 WD40 2.6e-238 53-393
HMMPanther PTHR22850:SF14 WD-40 2.6e-238 53-393
Seg seg seg NA 22-31
44-58
Wolf-PSORT
Lj6g3v1259720.1	nucl 12, cyto 1, plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1259720.1