Miyakogusa Predicted Gene
- Lj6g3v1249680.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A2Q545_MEDTR |
154 |
45.5 |
58.7 |
(tr|A2Q545) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_2g039320 PE=4 SV=1 |
| TAIR_pep |
AT5G56980.1 |
66.2 |
50.8 |
66.2 |
| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23056574-23057713 REVERSE LENGTH=379 |
| Medicago |
Medtr2g039320.1 |
154 |
45.5 |
58.7 |
| DUF4408 domain protein | HC | chr2:17235644-17236881 | 20130731 |
| Soybean |
Glyma09g07160.1 |
124 |
37.1 |
48.2 |
|
| LJGI |
gnl|LJGI|TC76659 |
799 |
100.0 |
100.0 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1249680.1 |
length: 228 aa. |
| IPR008480 |
Protein of unknown function DUF761, plant |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF05553 |
DUF761 |
1.3e-13 |
194-227 |
| IPR025520 |
Domain of unknown function DUF4408 |
| HMMPfam |
PF14364 |
DUF4408 |
2e-10 |
20-45 |
- Wolf-PSORT
Lj6g3v1249680.1 E.R._plas 3, plas 2.5, E.R. 2.5, chlo 2, cyto 2, extr 2, nucl 1, mito 1, vacu 1, cyto_pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1249680.1 |
|