Miyakogusa Predicted Gene

Lj6g3v1239570.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JG14_SOYBN 190 84.7 89.2 (tr|I1JG14) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G04600.1 147 68.0 80.0 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222
Medicago Medtr1g108290.1 182 85.2 88.0 | MKI67 interacting nucleolar phosphoprotein | HC | chr1:48970128-48966656 | 20130731
Soybean Glyma02g29190.2 190 84.7 89.2  
LJGI gnl|LJGI|TC59104 916 99.6 99.6 similar to UniRef100_Q2VCH8 Cluster: RNA binding protein-like protein; n=1; Solanum tuberosum|Rep: RNA binding protein-like protein - Solanum tuberosum (Potato), partial (82%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1239570.1 length: 155 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 3.3e-15 52-116
HMMSmart SM00360 RNA 7.9e-16 51-125
ProfileScan PS50102 RRM 14.385 50-137
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 5.8e-19 31-116
no_ID  
HMMPanther PTHR24011 FAMILY 6.2e-35 51-120
HMMPanther PTHR24011:SF16 PUTATIVE 6.2e-35 51-120
Seg seg seg NA 1-11
superfamily SSF54928 RNA-binding 3.6e-20 26-119
Wolf-PSORT
Lj6g3v1239570.1	mito 8.5, chlo_mito 6, nucl 3, chlo 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1239570.1 Not targeted -38.804 -0.694 -2.078 50.58% -36.032