Miyakogusa Predicted Gene

Lj6g3v1239560.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IIL3_MEDTR 726 82.9 89.2 (tr|G7IIL3) RecA OS=Medicago truncatula GN=MTR_2g039670 PE=3 SV=1
TAIR_pep AT2G19490.1 565 70.6 81.0 | Symbols: | recA DNA recombination family protein | chr2:8441732-8444006 FORWARD LENGTH=430
Medicago Medtr2g039670.1 726 82.9 89.2 | DNA repair and recombination protein | HC | chr2:17387359-17378929 | 20130731
Soybean Glyma09g07400.1 696 82.1 88.2  
LJGI gnl|LJGI|FS338603 704 100.0 100.0 homologue to UniRef100_A7PE62 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (44%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1239560.1 length: 426 aa.
IPR003593 AAA+ ATPase domain
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 3.2e-06 118-292
IPR013765 DNA recombination and repair protein RecA
Molecular Function GO:0003697 single-stranded DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0009432 SOS response    
FPrintScan PR00142 RECA 2.4e-73 154-183
188-217
226-255
274-302
307-336
360-377
HAMAP MF_00268 RecA 42.002 65-392
HMMPanther PTHR22942:SF1 DNA 1e-157 55-350
HMMPfam PF00154 RecA 2.3e-133 68-388
HMMTigr TIGR02012 tigrfam_recA: 4.8e-134 65-385
IPR020584 DNA recombination/repair protein RecA, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
PatternScan PS00321 RECA_1 NA 277-285
IPR020587 DNA recombination/repair protein RecA, monomer-monomer interface
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
ProfileScan PS50163 RECA_3 25.345 265-336
IPR020588 DNA recombination/repair protein RecA/RadB, ATP-binding domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
ProfileScan PS50162 RECA_2 57.539 96-259
IPR023400 DNA recombination and repair protein RecA, C-terminal
Gene3D G3DSA:3.30.250.10 no description 2e-09 334-388
superfamily SSF54752 RecA 2.7e-06 332-389
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-63 68-331
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.2e-65 95-331
HMMPanther PTHR22942 RECA/RAD51/RADA 1e-157 55-350
Seg seg seg NA 197-208
Wolf-PSORT
Lj6g3v1239560.1	chlo 11, mito 2.5, cyto_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1239560.1