Miyakogusa Predicted Gene

Lj6g3v1201200.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L1N9_SOYBN 1989 89.1 91.8 (tr|I1L1N9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G06210.1 1545 70.3 81.3 | Symbols: ELF8, VIP6 | binding | chr2:2429108-2436588 REVERSE LENGTH=1091
Medicago Medtr2g041420.1 1906 85.9 89.9 | TPR repeat nuclear phosphoprotein, putative | HC | chr2:18178481-18196400 | 20130731
Soybean Glyma09g07980.1 1921 86.7 89.3  
LJGI gnl|LJGI|BP056675 716 100.0 100.0 similar to UniRef100_A7PDY6 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1201200.1 length: 1082 aa.
IPR001440 Tetratricopeptide TPR-1
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00515 TPR_1 0.0092 449-475
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.9e-10 41-312
313-462
518-618
655-727
728-795
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 49.683 113-782
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF13181 TPR_8 0.31 130-160
HMMSmart SM00028 Tetratricopeptide 0.17 128-161
162-195
197-230
305-338
342-375
376-409
448-488
524-557
558-591
592-625
713-746
749-782
ProfileScan PS50005 TPR 7.995 128-161
162-195
197-230
305-338
342-375
376-409
448-481
558-591
713-746
749-782
no_ID  
Coil coil coiled-coil NA 801-822
855-923
HMMPanther PTHR14027 TPR 0 3-1082
HMMPanther PTHR14027:SF2 TPR 0 3-1082
HMMPfam PF13414 TPR_11 1.4e-07 165-228
375-437
713-780
HMMPfam PF13424 TPR_12 5.6e-09 306-373
Seg seg seg NA 862-885
939-961
970-988
superfamily SSF48452 TPR-like 0.00067 40-243
405-475
superfamily SSF81901 HCP-like 5.8e-18 199-417
526-796
Wolf-PSORT
Lj6g3v1201200.1	cyto 8, nucl 3, plas 1, pero 1, golg 1, golg_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1201200.1