Miyakogusa Predicted Gene

Lj6g3v1164020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JPD2_MEDTR 929 78.0 85.4 (tr|G7JPD2) DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_4g059460 PE=3 SV=1
TAIR_pep AT2G40700.1 729 62.8 76.3 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16976783-16979392 FORWARD LENGTH=609
Medicago Medtr4g059460.1 929 78.0 85.4 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr4:21899223-21892509 | 20130731
Soybean Glyma15g20000.1 878 75.5 82.5  
LJGI gnl|LJGI|TC72964 1380 100.0 100.0 similar to UniRef100_A7PDS5 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1164020.1 length: 614 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 200-208
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.9e-21 386-458
HMMSmart SM00490 helicase 9.6e-24 375-458
ProfileScan PS51194 HELICASE_CTER 17.789 332-505
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 4.6e-38 70-260
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 4.8e-51 64-291
ProfileScan PS51192 HELICASE_ATP_BIND_1 30.069 76-272
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.833 44-73
IPR025313 Domain of unknown function DUF4217
HMMPfam PF13959 DUF4217 1e-18 521-582
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 0.012 118-481
61-142
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.2e-37 42-276
311-481
HMMPanther PTHR24031 FAMILY 3.6e-229 43-609
HMMPanther PTHR24031:SF89 ATP-INDEPENDENT 3.6e-229 43-609
Seg seg seg NA 2-18
43-55
554-570
Wolf-PSORT
Lj6g3v1164020.1	nucl 12, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1164020.1