Miyakogusa Predicted Gene

Lj6g3v1104890.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q361_MEDTR 615 58.6 70.8 (tr|A2Q361) RNA-binding region RNP-1 (RNA recognition motif); Pyridoxal-dependent decarboxylase OS=Medicago truncatula GN=MTR_2g048340 PE=4 SV=1
TAIR_pep AT5G58130.1 220 37.5 51.4 | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:23521190-23523766 REVERSE LENGTH=748
Medicago Medtr2g048340.1 615 58.6 70.8 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr2:21279528-21285135 | 20130731
Soybean Glyma09g10320.1 591 57.0 67.9  
LJGI gnl|LJGI|TC67094 1568 99.9 99.9 similar to UniRef100_A2Q361 Cluster: RNA-binding region RNP-1 (RNA recognition motif); Pyridoxal-dependent decarboxylase; n=1; Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA recognition motif); Pyridoxal-dependent decarboxylase - Medicago truncatula (Barrel medic), partial (32%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1104890.1 length: 567 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 0.0075 12-85
ProfileScan PS50102 RRM 11.998 11-89
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4.3e-09 7-96
no_ID  
HMMPanther PTHR23099 TRANSCRIPTIONAL 7.7e-34 1-270
HMMPanther PTHR23099:SF0 SUBFAMILY 7.7e-34 1-270
HMMPfam PF14259 RRM_6 5.9e-06 13-83
Seg seg seg NA 203-214
404-425
superfamily SSF54928 RNA-binding 1.3e-10 1-90
Wolf-PSORT
Lj6g3v1104890.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1104890.1