Miyakogusa Predicted Gene

Lj6g3v1094850.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MHT6_SOYBN 1905 81.2 84.8 (tr|I1MHT6) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G39260.1 964 66.6 77.4 | Symbols: | binding;RNA binding | chr2:16392288-16399588 REVERSE LENGTH=1181
Medicago Medtr2g048630.1 1183 83.7 87.6 | regulator of nonsense transcripts-like protein | HC | chr2:21440873-21453740 | 20130731
Soybean Glyma15g22750.1 1900 81.1 84.7  
LJGI gnl|LJGI|TC65464 969 100.0 100.0 similar to UniRef100_Q2HSQ9 Cluster: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2; n=1; Medicago truncatula|Rep: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 - Medicago truncatula (Barrel medic), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1094850.1 length: 1208 aa.
IPR003890 MIF4G-like, type 3
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0005515 protein binding    
HMMPfam PF02854 MIF4G 8.3e-38 66-236
496-680
698-891
HMMSmart SM00543 Middle 1.6e-41 62-284
493-681
696-897
IPR007193 Up-frameshift suppressor 2
HMMPfam PF04050 Upf2 5.9e-57 972-1147
IPR016021 MIF4-like, type 1/2/3
Biological Process GO:0016070 RNA metabolic process    
Gene3D G3DSA:1.25.40.180 no description 5e-69 496-686
990-991
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 4.5e-10 691-916
490-686
80-184
no_ID  
Coil coil coiled-coil NA 17-38
62-90
433-454
564-585
HMMPanther PTHR12839 NONSENSE-MEDIATED 0 13-1197
HMMPanther PTHR12839:SF7 SUBFAMILY 0 13-1197
Seg seg seg NA 157-172
438-483
905-916
977-1015
1128-1139
1169-1201
Wolf-PSORT
Lj6g3v1094850.1	chlo 4, nucl 2.5, chlo_mito 2.5, cyto 2, plas 2, vacu 2, cysk_nucl 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1094850.1