Miyakogusa Predicted Gene

Lj6g3v1093620.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L242_SOYBN 820 69.0 80.3 (tr|I1L242) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G03540.1 694 56.4 72.9 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:883782-885611 FORWARD LENGTH=609
Medicago Medtr2g048855.1 870 70.2 80.0 | pentatricopeptide (PPR) repeat protein | HC | chr2:21642144-21644166 | 20130731
Soybean Glyma09g10800.1 820 69.0 80.3  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1093620.1 length: 639 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0019 133-159
205-226
308-332
336-360
405-430
505-527
HMMPfam PF13041 PPR_2 5.1e-10 232-280
431-475
HMMTigr TIGR00756 PPR: 0.0022 133-166
236-268
336-360
433-466
506-527
ProfileScan PS51375 PPR 6.982 63-97
130-164
98-129
200-230
165-199
232-267
268-302
334-368
303-333
431-465
400-430
466-501
502-532
534-564
568-602
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 7.7e-12 502-590
no_ID  
HMMPanther PTHR24015 FAMILY 2.9e-262 113-609
HMMPanther PTHR24015:SF16 HOMO 2.9e-262 113-609
Seg seg seg NA 16-24
superfamily SSF48452 TPR-like 1e-06 427-593
Wolf-PSORT
Lj6g3v1093620.1	mito 9.5, cyto_mito 5.5, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1093620.1