Miyakogusa Predicted Gene

Lj6g3v1093610.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IIU2_MEDTR 523 78.0 88.3 (tr|G7IIU2) p21-activated protein kinase-interacting protein 1-like protein OS=Medicago truncatula GN=MTR_2g049300 PE=4 SV=1
TAIR_pep AT1G65030.1 409 59.6 75.0 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:24156798-24158511 FORWARD LENGTH=345
Medicago Medtr2g049300.1 523 78.0 88.3 | p21-activated kinase-interacting-like protein | HC | chr2:21720716-21724907 | 20130731
Soybean Glyma15g23160.1 468 67.2 77.6  
LJGI gnl|LJGI|TC78508 2076 100.0 100.0 similar to UniRef100_A7PNN5 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (64%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1093610.1 length: 348 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3e-06 42-77
84-124
131-160
258-298
HMMSmart SM00320 WD40 1.9e-05 40-77
80-124
127-166
209-246
249-298
ProfileScan PS50082 WD_REPEATS_2 9.940 232-255
284-300
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2e-45 19-323
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 20.382 47-307
superfamily SSF50978 WD40 2.3e-45 24-323
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 233-247
285-299
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 2.2e-05 64-78
233-247
285-299
no_ID  
HMMPanther PTHR22847 WD40 1.7e-31 20-301
Wolf-PSORT
Lj6g3v1093610.1	cyto 9, nucl 2, plas 1, pero 1, cysk_nucl 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1093610.1