Miyakogusa Predicted Gene

Lj6g3v1093490.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L257_SOYBN 1985 84.4 91.4 (tr|I1L257) Phytochrome OS=Glycine max PE=3 SV=2
TAIR_pep AT4G18130.1 1456 62.9 77.9 | Symbols: PHYE | phytochrome E | chr4:10042312-10045948 REVERSE LENGTH=1112
Medicago Medtr2g049520.1 1808 76.8 86.5 | phytochrome protein | HC | chr2:21814696-21818763 | 20130731
Soybean Glyma09g11600.1 1965 85.3 91.9  
LJGI gnl|LJGI|TC82095 1689 100.0 100.0 similar to UniRef100_Q2HRN2 Cluster: Bacteriophytochrome; n=1; Medicago truncatula|Rep: Bacteriophytochrome - Medicago truncatula (Barrel medic), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1093490.1 length: 1121 aa.
IPR000014 PAS domain
method AccNumber shortName E-value location
Molecular Function GO:0004871 signal transducer activity    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00091 PAS 0.081 607-674
737-806
HMMTigr TIGR00229 sensory_box: 8.5e-11 612-726
ProfileScan PS50112 PAS 14.707 605-676
738-783
superfamily SSF55785 PYP-like 2.1e-12 611-720
721-857
IPR001294 Phytochrome
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
FPrintScan PR01033 PHYTOCHROME 4.7e-102 135-157
235-254
320-341
420-440
505-524
538-556
608-624
627-642
700-717
720-740
IPR003018 GAF domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF01590 GAF 3.5e-38 223-390
HMMSmart SM00065 Domain 2.5e-22 220-400
IPR003594 Histidine kinase-like ATPase, ATP-binding domain
Molecular Function GO:0005524 ATP binding    
Gene3D G3DSA:3.30.565.10 no description 3.4e-15 944-1108
HMMPfam PF02518 HATPase_c 4.1e-12 991-1097
HMMSmart SM00387 Histidine 1e-12 991-1105
superfamily SSF55874 ATPase 1.2e-16 946-1101
IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
Molecular Function GO:0000155 phosphorelay sensor kinase activity    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMPfam PF00512 HisKA 1.1e-07 883-943
HMMSmart SM00388 His 6.6e-08 879-943
IPR005467 Signal transduction histidine kinase, core
ProfileScan PS50109 HIS_KIN 34.593 886-1105
IPR012129 Phytochrome A/B/C/D/E
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009585 red, far-red light phototransduction    
Molecular Function GO:0009881 photoreceptor activity    
Biological Process GO:0017006 protein-tetrapyrrole linkage    
Molecular Function GO:0042803 protein homodimerization activity    
HMMPIR PIRSF000084 Phytochrome, 0 4-1117
IPR013515 Phytochrome, central region
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
Biological Process GO:0018298 protein-chromophore linkage    
HMMPfam PF00360 PHY 9.8e-69 401-578
IPR013654 PAS fold-2
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF08446 PAS_2 8.1e-40 73-187
IPR013767 PAS fold
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00989 PAS 2e-21 608-722
738-857
IPR016132 Phytochrome chromophore attachment domain
Biological Process GO:0018298 protein-chromophore linkage    
ProfileScan PS50046 PHYTOCHROME_2 66.648 220-380
no_ID  
Gene3D G3DSA:3.30.450.20 no description 8.5e-08 611-722
723-854
Gene3D G3DSA:3.30.450.40 no description 2.4e-05 224-365
HMMPanther PTHR24423 TWO 4.1e-30 608-1094
superfamily SSF55781 GAF 3.4e-10 220-404
Wolf-PSORT
Lj6g3v1093490.1	nucl 5, plas 4, chlo 1, mito 1, vacu 1, E.R. 1, golg 1, chlo_mito 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1093490.1