Miyakogusa Predicted Gene

Lj6g3v1093460.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IIX7_MEDTR 1213 70.2 81.8 (tr|G7IIX7) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_2g049740 PE=4 SV=1
TAIR_pep AT1G19290.1 749 49.7 68.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6666249-6668963 FORWARD LENGTH=904
Medicago Medtr2g049740.1 1213 70.2 81.8 | PPR containing plant-like protein | HC | chr2:22338668-22342717 | 20130731
Soybean Glyma09g11690.1 1171 74.7 84.7  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1093460.1 length: 859 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0032 160-185
472-502
HMMPfam PF12854 PPR_1 2.2e-10 220-252
329-357
361-393
HMMPfam PF13041 PPR_2 2.4e-19 258-307
403-446
505-553
577-623
717-761
784-833
HMMTigr TIGR00756 PPR: 4.1e-09 226-260
261-294
296-318
333-365
367-401
404-436
437-471
472-502
508-540
578-611
612-645
718-750
752-786
788-821
822-855
ProfileScan PS51375 PPR 13.165 99-133
154-188
189-223
224-258
259-293
294-328
330-364
365-399
400-434
435-469
505-539
470-504
540-574
575-609
610-644
645-679
715-749
750-784
785-819
820-854
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.6e-06 191-353
782-812
no_ID  
HMMPanther PTHR24015 FAMILY 4.6e-171 30-852
HMMPanther PTHR24015:SF0 SUBFAMILY 4.6e-171 30-852
Seg seg seg NA 9-18
41-53
65-85
317-331
superfamily SSF48452 TPR-like 0.0031 157-662
750-847
Wolf-PSORT
Lj6g3v1093460.1	chlo 8, mito 3, plas 1, extr 1, E.R. 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1093460.1