Miyakogusa Predicted Gene

Lj6g3v1078670.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S8H4_LOTJA 665 96.1 96.1 (tr|I3S8H4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT4G19810.1 336 49.9 64.6 | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379

Medicago Medtr3g110320.2 508 70.9 82.2 | glycoside hydrolase family 18 protein | HC | chr3:51483333-51479067 | 20130731

Soybean Glyma15g25060.1 495 72.3 84.7

LJGI gnl|LJGI|TC57207 2125 100.0 100.0 similar to UniRef100_A1YZD2 Cluster: Chitinase-related agglutinin; n=1; Robinia pseudoacacia|Rep: Chitinase-related agglutinin - Robinia pseudoacacia (Black locust), complete

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1078670.1 length: 365 aa.

IPR001223 Glycoside hydrolase, family 18, catalytic domain

method AccNumber shortName E-value location

Molecular Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Biological Process GO:0005975 carbohydrate metabolic process

HMMPfam PF00704 Glyco_hydro_18 2e-84 33-349

IPR011583 Chitinase II

Molecular Function GO:0004568 chitinase activity

Biological Process GO:0006032 chitin catabolic process

HMMSmart SM00636 no description 5.8e-90 28-349

IPR013781 Glycoside hydrolase, catalytic domain

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0005975 carbohydrate metabolic process

Gene3D G3DSA:3.20.20.80 no description 4.1e-79 33-354

IPR017853 Glycoside hydrolase, superfamily

superfamily SSF51445 (Trans)glycosidases 6.2e-68 28-349

no_ID

HMMPanther PTHR11177 CHITINASE 6.4e-114 33-359

HMMPanther PTHR11177:SF22 ARABIDOPSIS 6.4e-114 33-359

Seg seg seg NA 3-20
176-187

superfamily SSF54556 Chitinase 7.5e-08 263-321

Wolf-PSORT

Lj6g3v1078670.1 extr 5, chlo 4, vacu 2, plas 1.5, E.R._plas 1.5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1078670.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S8H4_LOTJA	665	96.1	96.1	(tr\|I3S8H4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT4G19810.1	336	49.9	64.6	\| Symbols: \| Glycosyl hydrolase family protein with chitinase insertion domain \| chr4:10764151-10765753 REVERSE LENGTH=379
Medicago	Medtr3g110320.2	508	70.9	82.2	\| glycoside hydrolase family 18 protein \| HC \| chr3:51483333-51479067 \| 20130731
Soybean	Glyma15g25060.1	495	72.3	84.7
LJGI	gnl\|LJGI\|TC57207	2125	100.0	100.0	similar to UniRef100_A1YZD2 Cluster: Chitinase-related agglutinin; n=1; Robinia pseudoacacia\|Rep: Chitinase-related agglutinin - Robinia pseudoacacia (Black locust), complete

IPR001223	Glycoside hydrolase, family 18, catalytic domain
Lj6g3v1078670.1				length: 365 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process	GO:0005975	carbohydrate metabolic process
HMMPfam	PF00704	Glyco_hydro_18	2e-84	33-349
IPR011583	Chitinase II
Molecular Function	GO:0004568	chitinase activity
Biological Process	GO:0006032	chitin catabolic process
HMMSmart	SM00636	no description	5.8e-90	28-349
IPR013781	Glycoside hydrolase, catalytic domain
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0005975	carbohydrate metabolic process
Gene3D	G3DSA:3.20.20.80	no description	4.1e-79	33-354
IPR017853	Glycoside hydrolase, superfamily
superfamily	SSF51445	(Trans)glycosidases	6.2e-68	28-349
no_ID
HMMPanther	PTHR11177	CHITINASE	6.4e-114	33-359
HMMPanther	PTHR11177:SF22	ARABIDOPSIS	6.4e-114	33-359
Seg	seg	seg	NA	3-20 176-187
superfamily	SSF54556	Chitinase	7.5e-08	263-321