Miyakogusa Predicted Gene

Lj6g3v1077310.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KK59_SOYBN 769 69.2 77.3 (tr|K7KK59) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G57870.1 578 54.9 68.7 | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=780

Medicago Medtr4g130570.1 736 65.4 75.0 | eukaryotic translation initiation factor iso4G | HC | chr4:54404124-54410540 | 20130731

Soybean Glyma04g23560.1 768 69.2 77.3

LJGI gnl|LJGI|TC64126 1106 99.8 99.8 similar to UniRef100_A7PFP5 Cluster: Chromosome chr11 scaffold_14, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_14, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1077310.2 length: 590 aa.

IPR003890 MIF4G-like, type 3

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0003723 RNA binding

Molecular Function GO:0005515 protein binding

HMMPfam PF02854 MIF4G 1.2e-46 10-235

HMMSmart SM00543 Middle 1e-41 5-235

IPR003891 Initiation factor eIF-4 gamma, MA3

HMMPfam PF02847 MA3 2.9e-21 428-538

HMMSmart SM00544 Domain 2.2e-25 426-538

ProfileScan PS51366 MI 21.793 425-547

IPR016021 MIF4-like, type 1/2/3

Biological Process GO:0016070 RNA metabolic process

Gene3D G3DSA:1.25.40.180 no description 1.7e-32 5-236
420-576

IPR016024 Armadillo-type fold

Molecular Function GO:0005488 binding

superfamily SSF48371 ARM 1.8e-36 1-238
418-559

no_ID

HMMPanther PTHR23253 EUKARYOTIC 2.6e-231 13-578

HMMPanther PTHR23253:SF2 EUKARYOTIC 2.6e-231 13-578

Seg seg seg NA 364-380
395-420

Wolf-PSORT

Lj6g3v1077310.2 chlo 4, plas 3, E.R. 3, E.R._plas 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1077310.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KK59_SOYBN	769	69.2	77.3	(tr\|K7KK59) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G57870.1	578	54.9	68.7	\| Symbols: eIFiso4G1 \| MIF4G domain-containing protein / MA3 domain-containing protein \| chr5:23439755-23443433 FORWARD LENGTH=780
Medicago	Medtr4g130570.1	736	65.4	75.0	\| eukaryotic translation initiation factor iso4G \| HC \| chr4:54404124-54410540 \| 20130731
Soybean	Glyma04g23560.1	768	69.2	77.3
LJGI	gnl\|LJGI\|TC64126	1106	99.8	99.8	similar to UniRef100_A7PFP5 Cluster: Chromosome chr11 scaffold_14, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr11 scaffold_14, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

IPR003890	MIF4G-like, type 3
Lj6g3v1077310.2				length: 590 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0003723	RNA binding
Molecular Function	GO:0005515	protein binding
HMMPfam	PF02854	MIF4G	1.2e-46	10-235
HMMSmart	SM00543	Middle	1e-41	5-235
IPR003891	Initiation factor eIF-4 gamma, MA3
HMMPfam	PF02847	MA3	2.9e-21	428-538
HMMSmart	SM00544	Domain	2.2e-25	426-538
ProfileScan	PS51366	MI	21.793	425-547
IPR016021	MIF4-like, type 1/2/3
Biological Process	GO:0016070	RNA metabolic process
Gene3D	G3DSA:1.25.40.180	no description	1.7e-32	5-236 420-576
IPR016024	Armadillo-type fold
Molecular Function	GO:0005488	binding
superfamily	SSF48371	ARM	1.8e-36	1-238 418-559
no_ID
HMMPanther	PTHR23253	EUKARYOTIC	2.6e-231	13-578
HMMPanther	PTHR23253:SF2	EUKARYOTIC	2.6e-231	13-578
Seg	seg	seg	NA	364-380 395-420