Miyakogusa Predicted Gene

Lj6g3v1049130.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1JWE5_SOYBN 1194 87.4 92.2 (tr|I1JWE5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G30360.1 960 70.9 81.9 | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated channel 17 | chr4:14855060-14857779 REVERSE LENGTH=720
Medicago Medtr2g460590.1 1107 82.1 87.7 | cyclic nucleotide-gated ion channel-like protein | HC | chr2:24974220-24980506 | 20130731
Soybean Glyma04g24950.1 1194 87.4 92.2  
LJGI gnl|LJGI|TC64300 1961 100.0 100.0 similar to UniRef100_A7QJQ9 Cluster: Chromosome undetermined scaffold_107, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_107, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1049130.1 length: 657 aa.
IPR000595 Cyclic nucleotide-binding domain
method AccNumber shortName E-value location
HMMPfam PF00027 cNMP_binding 7.3e-10 508-601
HMMSmart SM00100 Cyclic 3.6e-12 485-616
ProfileScan PS50042 CNMP_BINDING_3 10.971 485-615
IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG
Molecular Function GO:0005249 voltage-gated potassium channel activity    
Biological Process GO:0006813 potassium ion transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR01463 EAGCHANLFMLY 4.9e-05 145-154
262-272
380-391
398-407
448-455
IPR005821 Ion transport domain
Molecular Function GO:0005216 ion channel activity    
Biological Process GO:0006811 ion transport    
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00520 Ion_trans 3.4e-14 133-402
IPR014710 RmlC-like jelly roll fold
Gene3D G3DSA:2.60.120.10 no description 4.2e-24 483-601
IPR018490 Cyclic nucleotide-binding-like
superfamily SSF51206 cAMP-binding 1.6e-38 410-618
no_ID  
Gene3D G3DSA:1.10.287.630 no description 9.9e-14 408-476
Gene3D G3DSA:1.10.287.70 no description 1.1e-13 346-407
HMMPanther PTHR10217 VOLTAGE 0 67-657
HMMPanther PTHR10217:SF7 CYCLIC 0 67-657
Seg seg seg NA 34-44
superfamily SSF81324 Voltage-gated 1.8e-31 78-422
Wolf-PSORT
Lj6g3v1049130.1	plas 10, nucl 2, E.R. 1, golg 1, cyto_nucl 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1049130.1